Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26630

Experiment: m.b. Cephalothin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c26620 and PGA1_c26630 overlap by 1 nucleotidesPGA1_c26630 and PGA1_c26640 are separated by 42 nucleotides PGA1_c26620: PGA1_c26620 - putative molybdopterin biosynthesis protein MoeB, at 2,777,368 to 2,778,504 _c26620 PGA1_c26630: PGA1_c26630 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 2,778,504 to 2,778,959 _c26630 PGA1_c26640: PGA1_c26640 - coenzyme A biosynthesis bifunctional protein CoaBC, at 2,779,002 to 2,780,204 _c26640 Position (kb) 2778 2779Strain fitness (log2 ratio) -3 -2 -1 0 1at 2777.533 kb on + strand, within PGA1_c26620at 2777.554 kb on + strand, within PGA1_c26620at 2777.554 kb on + strand, within PGA1_c26620at 2777.554 kb on + strand, within PGA1_c26620at 2777.562 kb on - strand, within PGA1_c26620at 2777.562 kb on - strand, within PGA1_c26620at 2777.562 kb on - strand, within PGA1_c26620at 2777.562 kb on - strand, within PGA1_c26620at 2777.615 kb on - strand, within PGA1_c26620at 2777.781 kb on + strand, within PGA1_c26620at 2777.928 kb on + strand, within PGA1_c26620at 2778.036 kb on + strand, within PGA1_c26620at 2778.044 kb on - strand, within PGA1_c26620at 2778.044 kb on - strand, within PGA1_c26620at 2778.059 kb on - strand, within PGA1_c26620at 2778.138 kb on + strand, within PGA1_c26620at 2778.141 kb on - strand, within PGA1_c26620at 2778.226 kb on - strand, within PGA1_c26620at 2778.239 kb on - strand, within PGA1_c26620at 2778.265 kb on - strand, within PGA1_c26620at 2778.265 kb on - strand, within PGA1_c26620at 2778.413 kb on + strandat 2778.449 kb on - strandat 2778.472 kb on + strandat 2778.510 kb on - strandat 2778.520 kb on - strandat 2778.598 kb on + strand, within PGA1_c26630at 2778.606 kb on - strand, within PGA1_c26630at 2778.606 kb on - strand, within PGA1_c26630at 2778.662 kb on + strand, within PGA1_c26630at 2778.775 kb on - strand, within PGA1_c26630at 2778.775 kb on - strand, within PGA1_c26630at 2778.775 kb on - strand, within PGA1_c26630at 2778.810 kb on - strand, within PGA1_c26630at 2778.833 kb on + strand, within PGA1_c26630at 2778.835 kb on - strand, within PGA1_c26630at 2778.869 kb on + strand, within PGA1_c26630at 2778.911 kb on + strand, within PGA1_c26630at 2778.911 kb on + strand, within PGA1_c26630at 2778.932 kb on + strandat 2778.966 kb on + strandat 2778.966 kb on + strandat 2778.974 kb on - strandat 2779.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml
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2,777,533 + PGA1_c26620 0.15 -0.0
2,777,554 + PGA1_c26620 0.16 -0.5
2,777,554 + PGA1_c26620 0.16 +0.7
2,777,554 + PGA1_c26620 0.16 +0.7
2,777,562 - PGA1_c26620 0.17 -0.2
2,777,562 - PGA1_c26620 0.17 +0.0
2,777,562 - PGA1_c26620 0.17 +0.3
2,777,562 - PGA1_c26620 0.17 +0.1
2,777,615 - PGA1_c26620 0.22 +0.5
2,777,781 + PGA1_c26620 0.36 +0.4
2,777,928 + PGA1_c26620 0.49 -0.6
2,778,036 + PGA1_c26620 0.59 +0.1
2,778,044 - PGA1_c26620 0.59 -0.0
2,778,044 - PGA1_c26620 0.59 +0.6
2,778,059 - PGA1_c26620 0.61 +0.2
2,778,138 + PGA1_c26620 0.68 +0.1
2,778,141 - PGA1_c26620 0.68 +0.2
2,778,226 - PGA1_c26620 0.75 +0.6
2,778,239 - PGA1_c26620 0.77 -0.0
2,778,265 - PGA1_c26620 0.79 +0.4
2,778,265 - PGA1_c26620 0.79 +0.4
2,778,413 + +0.7
2,778,449 - +0.1
2,778,472 + +0.1
2,778,510 - +1.0
2,778,520 - +0.3
2,778,598 + PGA1_c26630 0.21 +0.2
2,778,606 - PGA1_c26630 0.22 +0.4
2,778,606 - PGA1_c26630 0.22 -0.5
2,778,662 + PGA1_c26630 0.35 -0.3
2,778,775 - PGA1_c26630 0.59 -0.0
2,778,775 - PGA1_c26630 0.59 +0.5
2,778,775 - PGA1_c26630 0.59 -0.3
2,778,810 - PGA1_c26630 0.67 +0.1
2,778,833 + PGA1_c26630 0.72 +0.1
2,778,835 - PGA1_c26630 0.73 +0.1
2,778,869 + PGA1_c26630 0.80 +0.6
2,778,911 + PGA1_c26630 0.89 -0.3
2,778,911 + PGA1_c26630 0.89 +0.7
2,778,932 + -1.0
2,778,966 + -0.4
2,778,966 + -3.0
2,778,974 - -0.6
2,779,008 - +0.1

Or see this region's nucleotide sequence