Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24830 and PGA1_c24840 are separated by 5 nucleotides PGA1_c24840 and PGA1_c24850 are separated by 178 nucleotides PGA1_c24850 and PGA1_c24860 are separated by 129 nucleotides PGA1_c24860 and PGA1_c24870 overlap by 8 nucleotides
PGA1_c24830: PGA1_c24830 - Protein of unknown function (DUF1150)., at 2,589,107 to 2,589,331
_c24830
PGA1_c24840: PGA1_c24840 - small heat shock protein IbpA, at 2,589,337 to 2,589,750
_c24840
PGA1_c24850: PGA1_c24850 - Uncharacterized conserved small protein containing a coiled-coil domain, at 2,589,929 to 2,590,153
_c24850
PGA1_c24860: PGA1_c24860 - phosphoribosylaminoimidazole carboxylase catalytic subunit PurE, at 2,590,283 to 2,590,783
_c24860
PGA1_c24870: PGA1_c24870 - phosphoribosylaminoimidazole carboxylase ATPase subunit PurK, at 2,590,776 to 2,591,864
_c24870
Position (kb)
2590
2591 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2589.289 kb on + strand, within PGA1_c24830 at 2589.297 kb on - strand, within PGA1_c24830 at 2589.306 kb on + strand, within PGA1_c24830 at 2589.314 kb on - strand at 2589.322 kb on - strand at 2589.324 kb on + strand at 2589.324 kb on + strand at 2589.324 kb on - strand at 2589.329 kb on - strand at 2589.332 kb on - strand at 2589.334 kb on + strand at 2589.334 kb on + strand at 2589.342 kb on - strand at 2589.342 kb on - strand at 2589.435 kb on + strand, within PGA1_c24840 at 2589.555 kb on + strand, within PGA1_c24840 at 2589.555 kb on + strand, within PGA1_c24840 at 2589.563 kb on - strand, within PGA1_c24840 at 2589.563 kb on - strand, within PGA1_c24840 at 2589.563 kb on - strand, within PGA1_c24840 at 2589.563 kb on - strand, within PGA1_c24840 at 2589.568 kb on + strand, within PGA1_c24840 at 2589.576 kb on - strand, within PGA1_c24840 at 2589.593 kb on + strand, within PGA1_c24840 at 2589.649 kb on + strand, within PGA1_c24840 at 2589.658 kb on - strand, within PGA1_c24840 at 2589.844 kb on + strand at 2589.845 kb on + strand at 2589.845 kb on + strand at 2589.845 kb on + strand at 2589.845 kb on + strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.853 kb on - strand at 2589.855 kb on + strand at 2589.858 kb on - strand at 2589.860 kb on - strand at 2589.863 kb on - strand at 2589.900 kb on + strand at 2589.900 kb on + strand at 2589.900 kb on + strand at 2589.908 kb on - strand at 2589.908 kb on - strand at 2589.908 kb on - strand at 2589.968 kb on + strand, within PGA1_c24850 at 2589.976 kb on - strand, within PGA1_c24850 at 2590.034 kb on + strand, within PGA1_c24850 at 2590.101 kb on - strand, within PGA1_c24850 at 2590.102 kb on + strand, within PGA1_c24850 at 2590.160 kb on - strand at 2590.162 kb on + strand at 2590.214 kb on - strand at 2590.559 kb on + strand, within PGA1_c24860 at 2590.567 kb on - strand, within PGA1_c24860 at 2591.016 kb on - strand, within PGA1_c24870 at 2591.056 kb on + strand, within PGA1_c24870 at 2591.088 kb on - strand, within PGA1_c24870 at 2591.134 kb on + strand, within PGA1_c24870 at 2591.264 kb on - strand, within PGA1_c24870 at 2591.297 kb on - strand, within PGA1_c24870 at 2591.366 kb on + strand, within PGA1_c24870 at 2591.420 kb on - strand, within PGA1_c24870 at 2591.452 kb on - strand, within PGA1_c24870 at 2591.475 kb on + strand, within PGA1_c24870 at 2591.565 kb on + strand, within PGA1_c24870 at 2591.565 kb on + strand, within PGA1_c24870 at 2591.707 kb on + strand, within PGA1_c24870 at 2591.740 kb on + strand, within PGA1_c24870 at 2591.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 2,589,289 + PGA1_c24830 0.81 -0.4 2,589,297 - PGA1_c24830 0.84 -0.7 2,589,306 + PGA1_c24830 0.88 -0.8 2,589,314 - -0.0 2,589,322 - -0.4 2,589,324 + -1.9 2,589,324 + +1.4 2,589,324 - -3.4 2,589,329 - -0.8 2,589,332 - +1.6 2,589,334 + -0.6 2,589,334 + -0.4 2,589,342 - -0.7 2,589,342 - -0.1 2,589,435 + PGA1_c24840 0.24 +0.1 2,589,555 + PGA1_c24840 0.53 +0.9 2,589,555 + PGA1_c24840 0.53 -1.1 2,589,563 - PGA1_c24840 0.55 -1.9 2,589,563 - PGA1_c24840 0.55 -1.5 2,589,563 - PGA1_c24840 0.55 -0.6 2,589,563 - PGA1_c24840 0.55 -0.3 2,589,568 + PGA1_c24840 0.56 -0.4 2,589,576 - PGA1_c24840 0.58 -0.3 2,589,593 + PGA1_c24840 0.62 -0.7 2,589,649 + PGA1_c24840 0.75 +0.9 2,589,658 - PGA1_c24840 0.78 +0.0 2,589,844 + -2.6 2,589,845 + -1.0 2,589,845 + -0.2 2,589,845 + +0.2 2,589,845 + -0.2 2,589,853 - +1.4 2,589,853 - -1.6 2,589,853 - +0.8 2,589,853 - -0.1 2,589,853 - +0.1 2,589,853 - -0.4 2,589,853 - -0.8 2,589,853 - -0.3 2,589,853 - +0.7 2,589,853 - -2.7 2,589,853 - +0.4 2,589,853 - -0.4 2,589,853 - -0.5 2,589,853 - -0.3 2,589,853 - +0.3 2,589,855 + +1.0 2,589,858 - -0.9 2,589,860 - +0.3 2,589,863 - +0.2 2,589,900 + -1.1 2,589,900 + -3.0 2,589,900 + -0.8 2,589,908 - -0.3 2,589,908 - -0.4 2,589,908 - -0.4 2,589,968 + PGA1_c24850 0.17 -0.5 2,589,976 - PGA1_c24850 0.21 -0.1 2,590,034 + PGA1_c24850 0.47 +0.6 2,590,101 - PGA1_c24850 0.76 +0.5 2,590,102 + PGA1_c24850 0.77 +0.3 2,590,160 - +0.2 2,590,162 + +0.6 2,590,214 - +0.4 2,590,559 + PGA1_c24860 0.55 +1.7 2,590,567 - PGA1_c24860 0.57 +0.2 2,591,016 - PGA1_c24870 0.22 +0.9 2,591,056 + PGA1_c24870 0.26 +0.1 2,591,088 - PGA1_c24870 0.29 +1.9 2,591,134 + PGA1_c24870 0.33 +0.2 2,591,264 - PGA1_c24870 0.45 +0.5 2,591,297 - PGA1_c24870 0.48 -1.5 2,591,366 + PGA1_c24870 0.54 +0.2 2,591,420 - PGA1_c24870 0.59 +0.6 2,591,452 - PGA1_c24870 0.62 +0.4 2,591,475 + PGA1_c24870 0.64 -1.1 2,591,565 + PGA1_c24870 0.72 +0.3 2,591,565 + PGA1_c24870 0.72 -2.6 2,591,707 + PGA1_c24870 0.85 -0.7 2,591,740 + PGA1_c24870 0.89 +0.7 2,591,779 - -0.1
Or see this region's nucleotide sequence