Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23880 and PGA1_c23890 are separated by 187 nucleotides PGA1_c23890 and PGA1_c23900 are separated by 262 nucleotides PGA1_c23900 and PGA1_c23910 are separated by 192 nucleotides
PGA1_c23880: PGA1_c23880 - nitrile hydratase subunit alpha, at 2,491,974 to 2,492,672
_c23880
PGA1_c23890: PGA1_c23890 - preprotein translocase secG-like protein, at 2,492,860 to 2,493,222
_c23890
PGA1_c23900: PGA1_c23900 - CTP synthase PyrG, at 2,493,485 to 2,495,128
_c23900
PGA1_c23910: PGA1_c23910 - fructose-bisphosphate aldolase class 1, at 2,495,321 to 2,496,223
_c23910
Position (kb)
2493
2494
2495
2496 Strain fitness (log2 ratio)
-2
-1
0
1 at 2492.495 kb on - strand, within PGA1_c23880 at 2492.495 kb on - strand, within PGA1_c23880 at 2492.529 kb on - strand, within PGA1_c23880 at 2492.539 kb on + strand, within PGA1_c23880 at 2492.618 kb on - strand at 2492.618 kb on - strand at 2492.618 kb on - strand at 2492.625 kb on + strand at 2492.646 kb on + strand at 2492.654 kb on - strand at 2492.667 kb on - strand at 2492.681 kb on + strand at 2492.689 kb on - strand at 2492.693 kb on + strand at 2492.702 kb on - strand at 2492.720 kb on - strand at 2492.737 kb on + strand at 2492.737 kb on + strand at 2492.765 kb on - strand at 2492.765 kb on - strand at 2492.765 kb on - strand at 2492.905 kb on - strand, within PGA1_c23890 at 2492.905 kb on - strand, within PGA1_c23890 at 2493.272 kb on + strand at 2493.277 kb on + strand at 2495.314 kb on - strand at 2495.638 kb on + strand, within PGA1_c23910
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 2,492,495 - PGA1_c23880 0.75 +0.2 2,492,495 - PGA1_c23880 0.75 -1.1 2,492,529 - PGA1_c23880 0.79 +0.0 2,492,539 + PGA1_c23880 0.81 -0.7 2,492,618 - +1.1 2,492,618 - +0.5 2,492,618 - +0.8 2,492,625 + +0.5 2,492,646 + -0.1 2,492,654 - +0.7 2,492,667 - +1.7 2,492,681 + +0.3 2,492,689 - +0.2 2,492,693 + -0.3 2,492,702 - +0.0 2,492,720 - +0.3 2,492,737 + -0.1 2,492,737 + -0.3 2,492,765 - -0.7 2,492,765 - +0.0 2,492,765 - -0.4 2,492,905 - PGA1_c23890 0.12 +0.3 2,492,905 - PGA1_c23890 0.12 +1.6 2,493,272 + -2.0 2,493,277 + -0.6 2,495,314 - -0.9 2,495,638 + PGA1_c23910 0.35 -1.1
Or see this region's nucleotide sequence