Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23800 and PGA1_c23810 are separated by 168 nucleotides PGA1_c23810 and PGA1_c23820 overlap by 1 nucleotides
PGA1_c23800: PGA1_c23800 - hypothetical protein, at 2,482,899 to 2,485,169
_c23800
PGA1_c23810: PGA1_c23810 - Protein of unknown function (DUF2842)., at 2,485,338 to 2,485,583
_c23810
PGA1_c23820: PGA1_c23820 - adenylosuccinate synthetase PurA, at 2,485,583 to 2,486,896
_c23820
Position (kb)
2485
2486 Strain fitness (log2 ratio)
-2
-1
0
1 at 2484.344 kb on - strand, within PGA1_c23800 at 2484.549 kb on + strand, within PGA1_c23800 at 2484.635 kb on + strand, within PGA1_c23800 at 2484.643 kb on - strand, within PGA1_c23800 at 2484.919 kb on + strand, within PGA1_c23800 at 2484.999 kb on + strand at 2485.007 kb on - strand at 2485.021 kb on + strand at 2485.030 kb on + strand at 2485.071 kb on - strand at 2485.123 kb on + strand at 2485.170 kb on + strand at 2485.170 kb on + strand at 2485.170 kb on + strand at 2485.178 kb on - strand at 2485.178 kb on - strand at 2485.178 kb on - strand at 2485.178 kb on - strand at 2485.178 kb on - strand at 2485.237 kb on - strand at 2485.238 kb on + strand at 2485.238 kb on + strand at 2485.246 kb on - strand at 2485.305 kb on - strand at 2485.366 kb on + strand, within PGA1_c23810 at 2485.367 kb on + strand, within PGA1_c23810 at 2485.411 kb on + strand, within PGA1_c23810 at 2485.414 kb on - strand, within PGA1_c23810 at 2485.474 kb on - strand, within PGA1_c23810 at 2485.526 kb on + strand, within PGA1_c23810 at 2485.545 kb on - strand, within PGA1_c23810
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 2,484,344 - PGA1_c23800 0.64 +0.3 2,484,549 + PGA1_c23800 0.73 +0.9 2,484,635 + PGA1_c23800 0.76 -0.1 2,484,643 - PGA1_c23800 0.77 -0.1 2,484,919 + PGA1_c23800 0.89 -1.0 2,484,999 + -0.4 2,485,007 - +1.1 2,485,021 + -0.1 2,485,030 + +1.4 2,485,071 - -0.9 2,485,123 + +0.3 2,485,170 + +0.7 2,485,170 + -0.3 2,485,170 + -1.8 2,485,178 - -0.7 2,485,178 - -0.2 2,485,178 - +0.2 2,485,178 - +0.4 2,485,178 - +1.3 2,485,237 - +0.1 2,485,238 + -0.7 2,485,238 + -0.0 2,485,246 - -0.9 2,485,305 - -0.2 2,485,366 + PGA1_c23810 0.11 -0.5 2,485,367 + PGA1_c23810 0.12 -0.0 2,485,411 + PGA1_c23810 0.30 +0.8 2,485,414 - PGA1_c23810 0.31 -1.0 2,485,474 - PGA1_c23810 0.55 +0.5 2,485,526 + PGA1_c23810 0.76 -1.6 2,485,545 - PGA1_c23810 0.84 +0.3
Or see this region's nucleotide sequence