Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02420 and PGA1_c02430 are separated by 235 nucleotides PGA1_c02430 and PGA1_c02440 overlap by 4 nucleotides
PGA1_c02420: PGA1_c02420 - V8-like Glu-specific endopeptidase, at 218,727 to 219,440
_c02420
PGA1_c02430: PGA1_c02430 - type I secretion membrane fusion protein, HlyD family, at 219,676 to 220,845
_c02430
PGA1_c02440: PGA1_c02440 - putative ATP-binding/permease fusion ABC transporter, at 220,842 to 223,208
_c02440
Position (kb) 219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.691 kb on + strand at 218.691 kb on + strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.698 kb on + strand at 218.698 kb on + strand at 218.699 kb on - strand at 218.699 kb on - strand at 218.706 kb on - strand at 218.706 kb on - strand at 218.707 kb on - strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.782 kb on - strand at 218.782 kb on - strand at 218.812 kb on - strand, within PGA1_c02420 at 218.835 kb on + strand, within PGA1_c02420 at 218.872 kb on - strand, within PGA1_c02420 at 218.996 kb on + strand, within PGA1_c02420 at 219.115 kb on + strand, within PGA1_c02420 at 219.115 kb on - strand, within PGA1_c02420 at 219.156 kb on - strand, within PGA1_c02420 at 219.176 kb on + strand, within PGA1_c02420 at 219.177 kb on + strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.232 kb on - strand, within PGA1_c02420 at 219.269 kb on - strand, within PGA1_c02420 at 219.297 kb on + strand, within PGA1_c02420 at 219.323 kb on - strand, within PGA1_c02420 at 219.456 kb on + strand at 219.495 kb on - strand at 219.524 kb on - strand at 219.578 kb on - strand at 219.578 kb on - strand at 219.589 kb on + strand at 219.589 kb on + strand at 219.589 kb on + strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.607 kb on - strand at 219.607 kb on - strand at 219.632 kb on + strand at 219.655 kb on + strand at 219.662 kb on + strand at 219.681 kb on - strand at 219.681 kb on - strand at 219.852 kb on - strand, within PGA1_c02430 at 219.931 kb on + strand, within PGA1_c02430 at 219.937 kb on + strand, within PGA1_c02430 at 219.945 kb on - strand, within PGA1_c02430 at 219.973 kb on + strand, within PGA1_c02430 at 219.991 kb on - strand, within PGA1_c02430 at 220.006 kb on - strand, within PGA1_c02430 at 220.006 kb on - strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.295 kb on + strand, within PGA1_c02430 at 220.303 kb on - strand, within PGA1_c02430 at 220.305 kb on + strand, within PGA1_c02430 at 220.337 kb on + strand, within PGA1_c02430 at 220.345 kb on - strand, within PGA1_c02430 at 220.415 kb on + strand, within PGA1_c02430 at 220.415 kb on + strand, within PGA1_c02430 at 220.423 kb on - strand, within PGA1_c02430 at 220.436 kb on + strand, within PGA1_c02430 at 220.439 kb on - strand, within PGA1_c02430 at 220.439 kb on - strand, within PGA1_c02430 at 220.597 kb on + strand, within PGA1_c02430 at 220.603 kb on + strand, within PGA1_c02430 at 220.611 kb on - strand, within PGA1_c02430 at 220.613 kb on + strand, within PGA1_c02430 at 220.613 kb on + strand, within PGA1_c02430 at 220.621 kb on - strand, within PGA1_c02430 at 220.622 kb on + strand, within PGA1_c02430 at 220.622 kb on + strand, within PGA1_c02430 at 220.627 kb on + strand, within PGA1_c02430 at 220.630 kb on - strand, within PGA1_c02430 at 220.636 kb on - strand, within PGA1_c02430 at 220.652 kb on - strand, within PGA1_c02430 at 220.696 kb on + strand, within PGA1_c02430 at 220.704 kb on - strand, within PGA1_c02430 at 220.737 kb on + strand at 220.832 kb on - strand at 220.870 kb on + strand at 220.893 kb on + strand at 220.893 kb on + strand at 220.893 kb on + strand at 220.893 kb on + strand at 221.050 kb on + strand at 221.052 kb on - strand at 221.092 kb on - strand, within PGA1_c02440 at 221.092 kb on - strand, within PGA1_c02440 at 221.178 kb on + strand, within PGA1_c02440 at 221.189 kb on + strand, within PGA1_c02440 at 221.223 kb on - strand, within PGA1_c02440 at 221.246 kb on + strand, within PGA1_c02440 at 221.253 kb on - strand, within PGA1_c02440 at 221.299 kb on - strand, within PGA1_c02440 at 221.299 kb on - strand, within PGA1_c02440 at 221.333 kb on + strand, within PGA1_c02440 at 221.343 kb on + strand, within PGA1_c02440 at 221.351 kb on - strand, within PGA1_c02440 at 221.356 kb on - strand, within PGA1_c02440 at 221.404 kb on + strand, within PGA1_c02440 at 221.404 kb on + strand, within PGA1_c02440 at 221.414 kb on + strand, within PGA1_c02440 at 221.414 kb on + strand, within PGA1_c02440 at 221.414 kb on + strand, within PGA1_c02440 at 221.414 kb on + strand, within PGA1_c02440 at 221.414 kb on + strand, within PGA1_c02440 at 221.414 kb on + strand, within PGA1_c02440 at 221.414 kb on + strand, within PGA1_c02440 at 221.414 kb on + strand, within PGA1_c02440 at 221.422 kb on - strand, within PGA1_c02440 at 221.422 kb on - strand, within PGA1_c02440 at 221.422 kb on - strand, within PGA1_c02440 at 221.423 kb on + strand, within PGA1_c02440 at 221.459 kb on + strand, within PGA1_c02440 at 221.459 kb on + strand, within PGA1_c02440 at 221.459 kb on + strand, within PGA1_c02440 at 221.459 kb on + strand, within PGA1_c02440 at 221.520 kb on + strand, within PGA1_c02440 at 221.528 kb on - strand, within PGA1_c02440 at 221.635 kb on + strand, within PGA1_c02440 at 221.635 kb on + strand, within PGA1_c02440 at 221.643 kb on - strand, within PGA1_c02440 at 221.643 kb on - strand, within PGA1_c02440 at 221.654 kb on - strand, within PGA1_c02440 at 221.690 kb on + strand, within PGA1_c02440 at 221.698 kb on - strand, within PGA1_c02440 at 221.708 kb on - strand, within PGA1_c02440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 218,686 + +0.6 218,686 + -1.9 218,686 + -0.1 218,686 + -1.2 218,686 + -0.1 218,686 + -0.3 218,686 + -2.5 218,686 + +0.9 218,686 + +0.6 218,686 + -0.1 218,686 + -0.9 218,686 + +1.5 218,686 + -0.7 218,691 + -0.7 218,691 + +0.5 218,694 - +0.2 218,694 - +0.1 218,694 - -1.0 218,694 - -0.2 218,698 + -0.3 218,698 + +0.2 218,699 - -0.2 218,699 - -1.1 218,706 - -0.2 218,706 - -0.2 218,707 - -1.3 218,774 + -0.4 218,774 + -0.1 218,774 + -0.2 218,774 + -0.1 218,774 + +0.6 218,782 - -2.4 218,782 - -1.3 218,812 - PGA1_c02420 0.12 +0.3 218,835 + PGA1_c02420 0.15 -0.3 218,872 - PGA1_c02420 0.20 -1.3 218,996 + PGA1_c02420 0.38 -1.2 219,115 + PGA1_c02420 0.54 +0.8 219,115 - PGA1_c02420 0.54 -1.2 219,156 - PGA1_c02420 0.60 +0.3 219,176 + PGA1_c02420 0.63 -0.1 219,177 + PGA1_c02420 0.63 -0.5 219,185 - PGA1_c02420 0.64 +0.3 219,185 - PGA1_c02420 0.64 -3.3 219,185 - PGA1_c02420 0.64 -1.6 219,232 - PGA1_c02420 0.71 -1.8 219,269 - PGA1_c02420 0.76 +0.7 219,297 + PGA1_c02420 0.80 +1.5 219,323 - PGA1_c02420 0.83 +0.2 219,456 + +1.1 219,495 - +0.4 219,524 - +0.5 219,578 - -0.7 219,578 - +0.4 219,589 + -0.2 219,589 + +0.5 219,589 + -0.2 219,597 - -0.1 219,597 - +1.5 219,597 - -0.1 219,597 - +0.5 219,607 - +0.7 219,607 - +1.5 219,632 + +0.4 219,655 + +0.5 219,662 + -0.4 219,681 - +0.1 219,681 - -0.1 219,852 - PGA1_c02430 0.15 +1.5 219,931 + PGA1_c02430 0.22 +1.6 219,937 + PGA1_c02430 0.22 +2.6 219,945 - PGA1_c02430 0.23 +1.3 219,973 + PGA1_c02430 0.25 +2.2 219,991 - PGA1_c02430 0.27 +1.5 220,006 - PGA1_c02430 0.28 +1.9 220,006 - PGA1_c02430 0.28 +1.7 220,221 + PGA1_c02430 0.47 +1.9 220,221 + PGA1_c02430 0.47 +1.5 220,221 + PGA1_c02430 0.47 +2.0 220,295 + PGA1_c02430 0.53 +1.2 220,303 - PGA1_c02430 0.54 +1.5 220,305 + PGA1_c02430 0.54 +1.8 220,337 + PGA1_c02430 0.56 +2.3 220,345 - PGA1_c02430 0.57 +1.7 220,415 + PGA1_c02430 0.63 +1.2 220,415 + PGA1_c02430 0.63 +1.8 220,423 - PGA1_c02430 0.64 +1.5 220,436 + PGA1_c02430 0.65 +2.4 220,439 - PGA1_c02430 0.65 +1.9 220,439 - PGA1_c02430 0.65 +1.2 220,597 + PGA1_c02430 0.79 +1.9 220,603 + PGA1_c02430 0.79 +1.1 220,611 - PGA1_c02430 0.80 +1.2 220,613 + PGA1_c02430 0.80 +1.4 220,613 + PGA1_c02430 0.80 +1.8 220,621 - PGA1_c02430 0.81 +2.3 220,622 + PGA1_c02430 0.81 +2.3 220,622 + PGA1_c02430 0.81 +1.3 220,627 + PGA1_c02430 0.81 +2.2 220,630 - PGA1_c02430 0.82 +2.7 220,636 - PGA1_c02430 0.82 +1.6 220,652 - PGA1_c02430 0.83 +2.6 220,696 + PGA1_c02430 0.87 +2.1 220,704 - PGA1_c02430 0.88 +2.4 220,737 + +2.3 220,832 - +3.1 220,870 + +1.5 220,893 + +1.8 220,893 + +1.8 220,893 + +2.4 220,893 + +1.1 221,050 + +1.7 221,052 - +1.9 221,092 - PGA1_c02440 0.11 +0.9 221,092 - PGA1_c02440 0.11 +1.1 221,178 + PGA1_c02440 0.14 +1.6 221,189 + PGA1_c02440 0.15 +2.0 221,223 - PGA1_c02440 0.16 +1.0 221,246 + PGA1_c02440 0.17 +2.4 221,253 - PGA1_c02440 0.17 +1.2 221,299 - PGA1_c02440 0.19 +2.3 221,299 - PGA1_c02440 0.19 +1.6 221,333 + PGA1_c02440 0.21 +1.9 221,343 + PGA1_c02440 0.21 +2.9 221,351 - PGA1_c02440 0.22 +1.5 221,356 - PGA1_c02440 0.22 +1.6 221,404 + PGA1_c02440 0.24 +1.5 221,404 + PGA1_c02440 0.24 +2.4 221,414 + PGA1_c02440 0.24 +3.4 221,414 + PGA1_c02440 0.24 +1.9 221,414 + PGA1_c02440 0.24 +1.3 221,414 + PGA1_c02440 0.24 +2.9 221,414 + PGA1_c02440 0.24 +2.2 221,414 + PGA1_c02440 0.24 +0.7 221,414 + PGA1_c02440 0.24 +1.7 221,414 + PGA1_c02440 0.24 +2.2 221,422 - PGA1_c02440 0.25 +1.2 221,422 - PGA1_c02440 0.25 +1.0 221,422 - PGA1_c02440 0.25 +1.5 221,423 + PGA1_c02440 0.25 +0.6 221,459 + PGA1_c02440 0.26 +2.3 221,459 + PGA1_c02440 0.26 +1.3 221,459 + PGA1_c02440 0.26 +2.4 221,459 + PGA1_c02440 0.26 +2.6 221,520 + PGA1_c02440 0.29 +2.6 221,528 - PGA1_c02440 0.29 +2.2 221,635 + PGA1_c02440 0.34 +1.4 221,635 + PGA1_c02440 0.34 +1.7 221,643 - PGA1_c02440 0.34 +0.6 221,643 - PGA1_c02440 0.34 +2.4 221,654 - PGA1_c02440 0.34 +1.2 221,690 + PGA1_c02440 0.36 +1.8 221,698 - PGA1_c02440 0.36 +3.0 221,708 - PGA1_c02440 0.37 +1.6
Or see this region's nucleotide sequence