Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2221 and HP15_2222 are separated by 604 nucleotides HP15_2222 and HP15_2223 are separated by 3 nucleotides HP15_2223 and HP15_2224 overlap by 4 nucleotides
HP15_2221: HP15_2221 - pseudouridine synthase, RluA family, at 2,337,042 to 2,338,100
_2221
HP15_2222: HP15_2222 - ribonuclease, Rne/Rng family, at 2,338,705 to 2,341,929
_2222
HP15_2223: HP15_2223 - protein containing YgfB and YecA domain, at 2,341,933 to 2,342,475
_2223
HP15_2224: HP15_2224 - PHP C-terminal domain protein, at 2,342,472 to 2,343,326
_2224
Position (kb)
2338
2339
2340
2341
2342 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2337.760 kb on - strand, within HP15_2221 at 2337.913 kb on + strand, within HP15_2221 at 2337.921 kb on - strand, within HP15_2221 at 2337.953 kb on - strand, within HP15_2221 at 2337.985 kb on - strand, within HP15_2221 at 2338.113 kb on + strand at 2340.438 kb on - strand, within HP15_2222 at 2340.495 kb on + strand, within HP15_2222 at 2340.628 kb on - strand, within HP15_2222 at 2340.817 kb on + strand, within HP15_2222 at 2341.377 kb on + strand, within HP15_2222 at 2341.452 kb on - strand, within HP15_2222 at 2341.453 kb on + strand, within HP15_2222 at 2341.548 kb on + strand, within HP15_2222 at 2341.556 kb on - strand, within HP15_2222 at 2341.685 kb on - strand at 2341.695 kb on - strand at 2341.914 kb on + strand at 2341.991 kb on - strand, within HP15_2223 at 2342.061 kb on - strand, within HP15_2223 at 2342.130 kb on + strand, within HP15_2223 at 2342.200 kb on - strand, within HP15_2223 at 2342.348 kb on + strand, within HP15_2223 at 2342.356 kb on - strand, within HP15_2223 at 2342.364 kb on - strand, within HP15_2223 at 2342.477 kb on - strand at 2342.477 kb on - strand at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.530 kb on - strand at 2342.563 kb on + strand, within HP15_2224 at 2342.676 kb on - strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.896 kb on + strand, within HP15_2224 at 2342.908 kb on + strand, within HP15_2224 at 2342.916 kb on - strand, within HP15_2224
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 2,337,760 - HP15_2221 0.68 +0.6 2,337,913 + HP15_2221 0.82 +1.0 2,337,921 - HP15_2221 0.83 +1.1 2,337,953 - HP15_2221 0.86 +0.9 2,337,985 - HP15_2221 0.89 +1.1 2,338,113 + +1.7 2,340,438 - HP15_2222 0.54 -2.0 2,340,495 + HP15_2222 0.56 -0.8 2,340,628 - HP15_2222 0.60 -1.2 2,340,817 + HP15_2222 0.65 -0.7 2,341,377 + HP15_2222 0.83 -0.4 2,341,452 - HP15_2222 0.85 -1.8 2,341,453 + HP15_2222 0.85 -0.8 2,341,548 + HP15_2222 0.88 -0.9 2,341,556 - HP15_2222 0.88 -1.6 2,341,685 - -1.5 2,341,695 - -3.0 2,341,914 + -2.3 2,341,991 - HP15_2223 0.11 -1.8 2,342,061 - HP15_2223 0.24 -0.8 2,342,130 + HP15_2223 0.36 +0.3 2,342,200 - HP15_2223 0.49 -0.0 2,342,348 + HP15_2223 0.76 -0.2 2,342,356 - HP15_2223 0.78 -0.2 2,342,364 - HP15_2223 0.79 -0.2 2,342,477 - +1.0 2,342,477 - +0.2 2,342,530 - +0.0 2,342,530 - -1.9 2,342,530 - -0.2 2,342,563 + HP15_2224 0.11 -0.6 2,342,676 - HP15_2224 0.24 -0.4 2,342,896 + HP15_2224 0.50 -0.6 2,342,896 + HP15_2224 0.50 -0.0 2,342,908 + HP15_2224 0.51 -0.4 2,342,916 - HP15_2224 0.52 +0.3
Or see this region's nucleotide sequence