Strain Fitness in Marinobacter adhaerens HP15 around HP15_2165

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2164 and HP15_2165 are separated by 334 nucleotidesHP15_2165 and HP15_2166 are separated by 28 nucleotides HP15_2164: HP15_2164 - ATP-binding protein of sugar ABC transporter, at 2,270,538 to 2,271,632 _2164 HP15_2165: HP15_2165 - sigma-54 dependent transcriptional regulator, at 2,271,967 to 2,273,847 _2165 HP15_2166: HP15_2166 - glycerol kinase, at 2,273,876 to 2,275,348 _2166 Position (kb) 2271 2272 2273 2274Strain fitness (log2 ratio) -2 -1 0 1at 2271.072 kb on + strand, within HP15_2164at 2271.074 kb on + strand, within HP15_2164at 2271.082 kb on - strand, within HP15_2164at 2271.084 kb on - strand, within HP15_2164at 2271.115 kb on + strand, within HP15_2164at 2271.201 kb on + strand, within HP15_2164at 2271.209 kb on - strand, within HP15_2164at 2271.216 kb on - strand, within HP15_2164at 2271.218 kb on + strand, within HP15_2164at 2271.234 kb on - strand, within HP15_2164at 2271.260 kb on - strand, within HP15_2164at 2271.362 kb on + strand, within HP15_2164at 2271.484 kb on - strand, within HP15_2164at 2271.484 kb on - strand, within HP15_2164at 2271.521 kb on + strand, within HP15_2164at 2271.620 kb on + strandat 2271.628 kb on - strandat 2271.674 kb on + strandat 2271.896 kb on + strandat 2272.093 kb on - strandat 2272.127 kb on - strandat 2272.175 kb on + strand, within HP15_2165at 2272.243 kb on + strand, within HP15_2165at 2272.251 kb on - strand, within HP15_2165at 2272.389 kb on + strand, within HP15_2165at 2272.468 kb on - strand, within HP15_2165at 2272.506 kb on + strand, within HP15_2165at 2272.514 kb on - strand, within HP15_2165at 2272.653 kb on + strand, within HP15_2165at 2272.668 kb on + strand, within HP15_2165at 2272.932 kb on - strand, within HP15_2165at 2272.942 kb on - strand, within HP15_2165at 2273.024 kb on - strand, within HP15_2165at 2273.131 kb on + strand, within HP15_2165at 2273.139 kb on - strand, within HP15_2165at 2273.181 kb on + strand, within HP15_2165at 2273.189 kb on - strand, within HP15_2165at 2273.235 kb on + strand, within HP15_2165at 2273.375 kb on + strand, within HP15_2165at 2273.410 kb on + strand, within HP15_2165at 2273.410 kb on + strand, within HP15_2165at 2273.419 kb on + strand, within HP15_2165at 2273.651 kb on - strand, within HP15_2165at 2273.657 kb on + strand, within HP15_2165at 2273.657 kb on + strand, within HP15_2165at 2273.665 kb on - strandat 2273.735 kb on - strandat 2273.814 kb on + strandat 2273.814 kb on + strandat 2273.907 kb on + strandat 2273.983 kb on + strandat 2273.993 kb on + strandat 2274.001 kb on - strandat 2274.121 kb on + strand, within HP15_2166at 2274.298 kb on + strand, within HP15_2166at 2274.399 kb on - strand, within HP15_2166at 2274.583 kb on + strand, within HP15_2166at 2274.632 kb on + strand, within HP15_2166at 2274.728 kb on + strand, within HP15_2166at 2274.784 kb on + strand, within HP15_2166at 2274.810 kb on + strand, within HP15_2166

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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2,271,072 + HP15_2164 0.49 +0.3
2,271,074 + HP15_2164 0.49 -0.4
2,271,082 - HP15_2164 0.50 +1.2
2,271,084 - HP15_2164 0.50 +0.2
2,271,115 + HP15_2164 0.53 +0.1
2,271,201 + HP15_2164 0.61 +0.6
2,271,209 - HP15_2164 0.61 -1.0
2,271,216 - HP15_2164 0.62 +0.3
2,271,218 + HP15_2164 0.62 +0.5
2,271,234 - HP15_2164 0.64 +0.3
2,271,260 - HP15_2164 0.66 +0.2
2,271,362 + HP15_2164 0.75 +0.5
2,271,484 - HP15_2164 0.86 +1.2
2,271,484 - HP15_2164 0.86 +0.4
2,271,521 + HP15_2164 0.90 +1.0
2,271,620 + -0.3
2,271,628 - +0.0
2,271,674 + +0.3
2,271,896 + -0.2
2,272,093 - +0.3
2,272,127 - +0.4
2,272,175 + HP15_2165 0.11 +0.6
2,272,243 + HP15_2165 0.15 +0.2
2,272,251 - HP15_2165 0.15 -0.2
2,272,389 + HP15_2165 0.22 +1.0
2,272,468 - HP15_2165 0.27 +0.1
2,272,506 + HP15_2165 0.29 +0.3
2,272,514 - HP15_2165 0.29 +0.1
2,272,653 + HP15_2165 0.36 +0.5
2,272,668 + HP15_2165 0.37 -0.7
2,272,932 - HP15_2165 0.51 -0.1
2,272,942 - HP15_2165 0.52 -0.5
2,273,024 - HP15_2165 0.56 +0.1
2,273,131 + HP15_2165 0.62 -0.0
2,273,139 - HP15_2165 0.62 +0.5
2,273,181 + HP15_2165 0.65 -0.1
2,273,189 - HP15_2165 0.65 +1.3
2,273,235 + HP15_2165 0.67 -0.8
2,273,375 + HP15_2165 0.75 +0.1
2,273,410 + HP15_2165 0.77 +0.6
2,273,410 + HP15_2165 0.77 -0.9
2,273,419 + HP15_2165 0.77 -0.6
2,273,651 - HP15_2165 0.90 -0.4
2,273,657 + HP15_2165 0.90 -0.1
2,273,657 + HP15_2165 0.90 +0.2
2,273,665 - +0.0
2,273,735 - +0.2
2,273,814 + -0.3
2,273,814 + +0.7
2,273,907 + -1.4
2,273,983 + +0.2
2,273,993 + -0.8
2,274,001 - +0.1
2,274,121 + HP15_2166 0.17 -0.5
2,274,298 + HP15_2166 0.29 -2.4
2,274,399 - HP15_2166 0.36 +0.0
2,274,583 + HP15_2166 0.48 -1.5
2,274,632 + HP15_2166 0.51 -1.1
2,274,728 + HP15_2166 0.58 -0.4
2,274,784 + HP15_2166 0.62 -1.2
2,274,810 + HP15_2166 0.63 -0.9

Or see this region's nucleotide sequence