Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02280 and PGA1_c02290 are separated by 2 nucleotides PGA1_c02290 and PGA1_c02300 overlap by 8 nucleotides PGA1_c02300 and PGA1_c02310 overlap by 4 nucleotides
PGA1_c02280: PGA1_c02280 - hypothetical protein, at 204,727 to 205,677
_c02280
PGA1_c02290: PGA1_c02290 - putative NAD dependent epimerase/dehydratase, at 205,680 to 206,477
_c02290
PGA1_c02300: PGA1_c02300 - putative glycosyl transferase, at 206,470 to 207,246
_c02300
PGA1_c02310: PGA1_c02310 - putative pyridoxal-phosphate-dependent aminotransferase, at 207,243 to 208,439
_c02310
Position (kb) 205
206
207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 204.749 kb on - strand at 204.794 kb on + strand at 204.803 kb on + strand at 204.811 kb on - strand at 204.821 kb on + strand at 204.845 kb on + strand, within PGA1_c02280 at 204.848 kb on - strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.852 kb on + strand, within PGA1_c02280 at 204.887 kb on - strand, within PGA1_c02280 at 204.897 kb on - strand, within PGA1_c02280 at 204.908 kb on - strand, within PGA1_c02280 at 204.918 kb on - strand, within PGA1_c02280 at 204.939 kb on - strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.952 kb on + strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.960 kb on - strand, within PGA1_c02280 at 204.989 kb on + strand, within PGA1_c02280 at 204.994 kb on + strand, within PGA1_c02280 at 204.997 kb on - strand, within PGA1_c02280 at 204.997 kb on - strand, within PGA1_c02280 at 204.999 kb on + strand, within PGA1_c02280 at 205.017 kb on + strand, within PGA1_c02280 at 205.025 kb on - strand, within PGA1_c02280 at 205.059 kb on - strand, within PGA1_c02280 at 205.073 kb on - strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.118 kb on + strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.126 kb on - strand, within PGA1_c02280 at 205.131 kb on - strand, within PGA1_c02280 at 205.153 kb on + strand, within PGA1_c02280 at 205.208 kb on - strand, within PGA1_c02280 at 205.229 kb on + strand, within PGA1_c02280 at 205.247 kb on + strand, within PGA1_c02280 at 205.247 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.255 kb on - strand, within PGA1_c02280 at 205.285 kb on + strand, within PGA1_c02280 at 205.290 kb on + strand, within PGA1_c02280 at 205.293 kb on - strand, within PGA1_c02280 at 205.294 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.298 kb on - strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.313 kb on + strand, within PGA1_c02280 at 205.321 kb on - strand, within PGA1_c02280 at 205.321 kb on - strand, within PGA1_c02280 at 205.362 kb on + strand, within PGA1_c02280 at 205.370 kb on - strand, within PGA1_c02280 at 205.376 kb on - strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.410 kb on + strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.418 kb on - strand, within PGA1_c02280 at 205.450 kb on + strand, within PGA1_c02280 at 205.455 kb on + strand, within PGA1_c02280 at 205.458 kb on - strand, within PGA1_c02280 at 205.463 kb on - strand, within PGA1_c02280 at 205.477 kb on + strand, within PGA1_c02280 at 205.483 kb on - strand, within PGA1_c02280 at 205.483 kb on - strand, within PGA1_c02280 at 205.485 kb on - strand, within PGA1_c02280 at 205.491 kb on + strand, within PGA1_c02280 at 205.548 kb on - strand, within PGA1_c02280 at 205.549 kb on - strand, within PGA1_c02280 at 205.578 kb on + strand, within PGA1_c02280 at 205.601 kb on + strand at 205.638 kb on - strand at 205.724 kb on + strand at 205.731 kb on + strand at 205.731 kb on + strand at 205.731 kb on + strand at 205.734 kb on - strand at 205.739 kb on - strand at 205.750 kb on + strand at 205.759 kb on - strand at 205.783 kb on + strand, within PGA1_c02290 at 205.783 kb on + strand, within PGA1_c02290 at 205.783 kb on + strand, within PGA1_c02290 at 205.788 kb on + strand, within PGA1_c02290 at 205.788 kb on + strand, within PGA1_c02290 at 205.791 kb on - strand, within PGA1_c02290 at 205.791 kb on - strand, within PGA1_c02290 at 205.796 kb on - strand, within PGA1_c02290 at 205.796 kb on - strand, within PGA1_c02290 at 205.807 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.812 kb on + strand, within PGA1_c02290 at 205.815 kb on - strand, within PGA1_c02290 at 205.820 kb on - strand, within PGA1_c02290 at 205.836 kb on - strand, within PGA1_c02290 at 205.864 kb on + strand, within PGA1_c02290 at 205.882 kb on - strand, within PGA1_c02290 at 205.888 kb on + strand, within PGA1_c02290 at 205.960 kb on + strand, within PGA1_c02290 at 205.994 kb on + strand, within PGA1_c02290 at 205.994 kb on + strand, within PGA1_c02290 at 206.008 kb on + strand, within PGA1_c02290 at 206.012 kb on - strand, within PGA1_c02290 at 206.012 kb on - strand, within PGA1_c02290 at 206.074 kb on + strand, within PGA1_c02290 at 206.077 kb on - strand, within PGA1_c02290 at 206.096 kb on + strand, within PGA1_c02290 at 206.179 kb on + strand, within PGA1_c02290 at 206.215 kb on - strand, within PGA1_c02290 at 206.215 kb on - strand, within PGA1_c02290 at 206.232 kb on - strand, within PGA1_c02290 at 206.239 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.270 kb on + strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.278 kb on - strand, within PGA1_c02290 at 206.306 kb on + strand, within PGA1_c02290 at 206.319 kb on + strand, within PGA1_c02290 at 206.436 kb on - strand at 206.441 kb on - strand at 206.445 kb on - strand at 206.448 kb on + strand at 206.449 kb on + strand at 206.502 kb on + strand at 206.523 kb on + strand at 206.526 kb on - strand at 206.531 kb on - strand at 206.531 kb on - strand at 206.538 kb on - strand at 206.571 kb on + strand, within PGA1_c02300 at 206.575 kb on - strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.586 kb on + strand, within PGA1_c02300 at 206.600 kb on + strand, within PGA1_c02300 at 206.603 kb on + strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300 at 206.608 kb on - strand, within PGA1_c02300 at 206.681 kb on + strand, within PGA1_c02300 at 206.710 kb on - strand, within PGA1_c02300 at 206.727 kb on + strand, within PGA1_c02300 at 206.729 kb on + strand, within PGA1_c02300 at 206.729 kb on + strand, within PGA1_c02300 at 206.771 kb on + strand, within PGA1_c02300 at 206.778 kb on + strand, within PGA1_c02300 at 206.802 kb on - strand, within PGA1_c02300 at 206.803 kb on - strand, within PGA1_c02300 at 206.803 kb on - strand, within PGA1_c02300 at 206.808 kb on - strand, within PGA1_c02300 at 206.810 kb on + strand, within PGA1_c02300 at 206.810 kb on + strand, within PGA1_c02300 at 206.818 kb on - strand, within PGA1_c02300 at 206.841 kb on + strand, within PGA1_c02300 at 206.844 kb on + strand, within PGA1_c02300 at 206.903 kb on - strand, within PGA1_c02300 at 206.913 kb on - strand, within PGA1_c02300 at 206.913 kb on - strand, within PGA1_c02300 at 206.928 kb on + strand, within PGA1_c02300 at 206.944 kb on + strand, within PGA1_c02300 at 206.947 kb on - strand, within PGA1_c02300 at 206.954 kb on + strand, within PGA1_c02300 at 206.987 kb on - strand, within PGA1_c02300 at 206.998 kb on + strand, within PGA1_c02300 at 206.998 kb on + strand, within PGA1_c02300 at 207.033 kb on - strand, within PGA1_c02300 at 207.065 kb on + strand, within PGA1_c02300 at 207.065 kb on + strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.073 kb on - strand, within PGA1_c02300 at 207.122 kb on - strand, within PGA1_c02300 at 207.179 kb on + strand at 207.187 kb on - strand at 207.187 kb on - strand at 207.200 kb on + strand at 207.208 kb on - strand at 207.231 kb on - strand at 207.243 kb on - strand at 207.274 kb on + strand at 207.274 kb on + strand at 207.282 kb on - strand at 207.282 kb on - strand at 207.304 kb on + strand at 207.355 kb on - strand at 207.398 kb on - strand, within PGA1_c02310 at 207.398 kb on - strand, within PGA1_c02310 at 207.408 kb on - strand, within PGA1_c02310 at 207.414 kb on + strand, within PGA1_c02310 at 207.425 kb on + strand, within PGA1_c02310 at 207.443 kb on + strand, within PGA1_c02310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 204,749 - -0.3 204,794 + -1.5 204,803 + +0.4 204,811 - +0.1 204,821 + +0.0 204,845 + PGA1_c02280 0.12 +0.8 204,848 - PGA1_c02280 0.13 +0.1 204,852 + PGA1_c02280 0.13 -0.4 204,852 + PGA1_c02280 0.13 +0.3 204,852 + PGA1_c02280 0.13 +0.9 204,887 - PGA1_c02280 0.17 -0.1 204,897 - PGA1_c02280 0.18 -0.5 204,908 - PGA1_c02280 0.19 -0.2 204,918 - PGA1_c02280 0.20 +0.4 204,939 - PGA1_c02280 0.22 -0.1 204,952 + PGA1_c02280 0.24 +0.5 204,952 + PGA1_c02280 0.24 -1.2 204,952 + PGA1_c02280 0.24 -0.8 204,960 - PGA1_c02280 0.25 -0.1 204,960 - PGA1_c02280 0.25 +0.9 204,960 - PGA1_c02280 0.25 +0.6 204,989 + PGA1_c02280 0.28 -0.5 204,994 + PGA1_c02280 0.28 -1.3 204,997 - PGA1_c02280 0.28 +0.4 204,997 - PGA1_c02280 0.28 +0.2 204,999 + PGA1_c02280 0.29 -1.3 205,017 + PGA1_c02280 0.30 -2.4 205,025 - PGA1_c02280 0.31 -0.6 205,059 - PGA1_c02280 0.35 -0.4 205,073 - PGA1_c02280 0.36 -0.9 205,118 + PGA1_c02280 0.41 -0.4 205,118 + PGA1_c02280 0.41 -0.2 205,118 + PGA1_c02280 0.41 -0.3 205,118 + PGA1_c02280 0.41 -0.3 205,126 - PGA1_c02280 0.42 -0.6 205,126 - PGA1_c02280 0.42 -0.1 205,126 - PGA1_c02280 0.42 +0.5 205,126 - PGA1_c02280 0.42 +0.1 205,126 - PGA1_c02280 0.42 -0.6 205,126 - PGA1_c02280 0.42 +0.1 205,131 - PGA1_c02280 0.42 -0.5 205,153 + PGA1_c02280 0.45 -0.2 205,208 - PGA1_c02280 0.51 +1.1 205,229 + PGA1_c02280 0.53 -0.2 205,247 + PGA1_c02280 0.55 +0.5 205,247 - PGA1_c02280 0.55 +0.7 205,255 - PGA1_c02280 0.56 +0.4 205,255 - PGA1_c02280 0.56 -0.3 205,255 - PGA1_c02280 0.56 -0.6 205,285 + PGA1_c02280 0.59 +0.0 205,290 + PGA1_c02280 0.59 -0.6 205,293 - PGA1_c02280 0.60 +1.4 205,294 - PGA1_c02280 0.60 -0.3 205,298 - PGA1_c02280 0.60 +0.1 205,298 - PGA1_c02280 0.60 -1.5 205,298 - PGA1_c02280 0.60 +0.0 205,298 - PGA1_c02280 0.60 +0.3 205,313 + PGA1_c02280 0.62 +0.1 205,313 + PGA1_c02280 0.62 +0.8 205,313 + PGA1_c02280 0.62 -0.0 205,321 - PGA1_c02280 0.62 +0.4 205,321 - PGA1_c02280 0.62 +0.5 205,362 + PGA1_c02280 0.67 -0.4 205,370 - PGA1_c02280 0.68 +1.2 205,376 - PGA1_c02280 0.68 -0.7 205,410 + PGA1_c02280 0.72 -1.0 205,410 + PGA1_c02280 0.72 -1.3 205,410 + PGA1_c02280 0.72 -0.1 205,410 + PGA1_c02280 0.72 -0.8 205,410 + PGA1_c02280 0.72 -1.4 205,410 + PGA1_c02280 0.72 +1.8 205,410 + PGA1_c02280 0.72 -0.6 205,410 + PGA1_c02280 0.72 +1.4 205,410 + PGA1_c02280 0.72 +1.8 205,410 + PGA1_c02280 0.72 -1.1 205,418 - PGA1_c02280 0.73 +0.2 205,418 - PGA1_c02280 0.73 -1.0 205,418 - PGA1_c02280 0.73 -1.5 205,418 - PGA1_c02280 0.73 -0.3 205,418 - PGA1_c02280 0.73 -0.6 205,450 + PGA1_c02280 0.76 -0.3 205,455 + PGA1_c02280 0.77 +0.3 205,458 - PGA1_c02280 0.77 -0.6 205,463 - PGA1_c02280 0.77 -0.7 205,477 + PGA1_c02280 0.79 -0.6 205,483 - PGA1_c02280 0.79 -0.4 205,483 - PGA1_c02280 0.79 +0.2 205,485 - PGA1_c02280 0.80 +0.0 205,491 + PGA1_c02280 0.80 +0.4 205,548 - PGA1_c02280 0.86 -3.1 205,549 - PGA1_c02280 0.86 -1.2 205,578 + PGA1_c02280 0.89 +0.3 205,601 + -1.0 205,638 - -0.4 205,724 + -0.6 205,731 + +1.9 205,731 + -0.5 205,731 + -0.4 205,734 - -2.0 205,739 - -2.0 205,750 + -0.4 205,759 - -1.1 205,783 + PGA1_c02290 0.13 -0.2 205,783 + PGA1_c02290 0.13 -0.8 205,783 + PGA1_c02290 0.13 +0.5 205,788 + PGA1_c02290 0.14 -0.6 205,788 + PGA1_c02290 0.14 -0.2 205,791 - PGA1_c02290 0.14 -1.3 205,791 - PGA1_c02290 0.14 -0.4 205,796 - PGA1_c02290 0.15 -2.0 205,796 - PGA1_c02290 0.15 -2.1 205,807 + PGA1_c02290 0.16 -0.6 205,812 + PGA1_c02290 0.17 -0.6 205,812 + PGA1_c02290 0.17 -0.4 205,812 + PGA1_c02290 0.17 -0.5 205,815 - PGA1_c02290 0.17 -0.8 205,820 - PGA1_c02290 0.18 +0.1 205,836 - PGA1_c02290 0.20 +0.4 205,864 + PGA1_c02290 0.23 -0.6 205,882 - PGA1_c02290 0.25 -1.8 205,888 + PGA1_c02290 0.26 +0.5 205,960 + PGA1_c02290 0.35 -0.9 205,994 + PGA1_c02290 0.39 -1.0 205,994 + PGA1_c02290 0.39 -2.7 206,008 + PGA1_c02290 0.41 -1.3 206,012 - PGA1_c02290 0.42 -0.8 206,012 - PGA1_c02290 0.42 +0.1 206,074 + PGA1_c02290 0.49 -0.3 206,077 - PGA1_c02290 0.50 +0.8 206,096 + PGA1_c02290 0.52 +0.0 206,179 + PGA1_c02290 0.63 +1.3 206,215 - PGA1_c02290 0.67 +0.0 206,215 - PGA1_c02290 0.67 -2.3 206,232 - PGA1_c02290 0.69 -0.3 206,239 + PGA1_c02290 0.70 -0.1 206,270 + PGA1_c02290 0.74 +0.7 206,270 + PGA1_c02290 0.74 -0.2 206,278 - PGA1_c02290 0.75 +0.3 206,278 - PGA1_c02290 0.75 -1.6 206,278 - PGA1_c02290 0.75 -0.3 206,278 - PGA1_c02290 0.75 -1.0 206,278 - PGA1_c02290 0.75 +0.1 206,278 - PGA1_c02290 0.75 +0.4 206,306 + PGA1_c02290 0.78 -1.4 206,319 + PGA1_c02290 0.80 +0.6 206,436 - -0.3 206,441 - +0.4 206,445 - +0.6 206,448 + -0.3 206,449 + -0.3 206,502 + -2.3 206,523 + +0.6 206,526 - -0.8 206,531 - -1.9 206,531 - -1.4 206,538 - +0.4 206,571 + PGA1_c02300 0.13 -0.0 206,575 - PGA1_c02300 0.14 +0.5 206,586 + PGA1_c02300 0.15 -0.4 206,586 + PGA1_c02300 0.15 +0.4 206,600 + PGA1_c02300 0.17 +0.1 206,603 + PGA1_c02300 0.17 -0.2 206,608 - PGA1_c02300 0.18 -1.8 206,608 - PGA1_c02300 0.18 -0.6 206,681 + PGA1_c02300 0.27 +0.1 206,710 - PGA1_c02300 0.31 +0.1 206,727 + PGA1_c02300 0.33 -0.4 206,729 + PGA1_c02300 0.33 -0.5 206,729 + PGA1_c02300 0.33 +0.1 206,771 + PGA1_c02300 0.39 +0.1 206,778 + PGA1_c02300 0.40 -1.2 206,802 - PGA1_c02300 0.43 -1.4 206,803 - PGA1_c02300 0.43 -0.3 206,803 - PGA1_c02300 0.43 -1.2 206,808 - PGA1_c02300 0.44 +0.2 206,810 + PGA1_c02300 0.44 +0.4 206,810 + PGA1_c02300 0.44 -0.5 206,818 - PGA1_c02300 0.45 +0.1 206,841 + PGA1_c02300 0.48 -0.5 206,844 + PGA1_c02300 0.48 -0.7 206,903 - PGA1_c02300 0.56 -0.8 206,913 - PGA1_c02300 0.57 +0.3 206,913 - PGA1_c02300 0.57 -0.4 206,928 + PGA1_c02300 0.59 -0.2 206,944 + PGA1_c02300 0.61 +0.3 206,947 - PGA1_c02300 0.61 +0.0 206,954 + PGA1_c02300 0.62 -1.4 206,987 - PGA1_c02300 0.67 +0.2 206,998 + PGA1_c02300 0.68 -0.1 206,998 + PGA1_c02300 0.68 -0.5 207,033 - PGA1_c02300 0.72 +0.5 207,065 + PGA1_c02300 0.77 +0.6 207,065 + PGA1_c02300 0.77 +0.4 207,073 - PGA1_c02300 0.78 +0.9 207,073 - PGA1_c02300 0.78 +1.0 207,073 - PGA1_c02300 0.78 -0.4 207,122 - PGA1_c02300 0.84 -0.9 207,179 + -0.2 207,187 - +0.7 207,187 - -0.8 207,200 + -2.2 207,208 - -1.6 207,231 - +0.2 207,243 - -0.2 207,274 + -0.3 207,274 + -0.9 207,282 - -2.4 207,282 - -1.5 207,304 + -0.8 207,355 - -1.0 207,398 - PGA1_c02310 0.13 -0.5 207,398 - PGA1_c02310 0.13 -1.2 207,408 - PGA1_c02310 0.14 -2.1 207,414 + PGA1_c02310 0.14 +0.5 207,425 + PGA1_c02310 0.15 -1.1 207,443 + PGA1_c02310 0.17 -1.4
Or see this region's nucleotide sequence