Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21560 and PGA1_c21570 are separated by 69 nucleotides PGA1_c21570 and PGA1_c21580 are separated by 283 nucleotides PGA1_c21580 and PGA1_c21590 overlap by 4 nucleotides PGA1_c21590 and PGA1_c21600 are separated by 93 nucleotides
PGA1_c21560: PGA1_c21560 - hypothetical protein, at 2,235,476 to 2,235,832
_c21560
PGA1_c21570: PGA1_c21570 - hypothetical protein, at 2,235,902 to 2,236,042
_c21570
PGA1_c21580: PGA1_c21580 - hypothetical protein, at 2,236,326 to 2,236,844
_c21580
PGA1_c21590: PGA1_c21590 - hypothetical protein, at 2,236,841 to 2,237,032
_c21590
PGA1_c21600: PGA1_c21600 - propionyl-CoA carboxylase beta chain, at 2,237,126 to 2,238,658
_c21600
Position (kb)
2236
2237 Strain fitness (log2 ratio)
-2
-1
0
1 at 2235.355 kb on + strand at 2235.410 kb on - strand at 2235.457 kb on - strand at 2235.457 kb on - strand at 2235.916 kb on - strand, within PGA1_c21570 at 2235.926 kb on - strand, within PGA1_c21570 at 2235.967 kb on - strand, within PGA1_c21570 at 2235.979 kb on + strand, within PGA1_c21570 at 2236.078 kb on + strand at 2236.086 kb on - strand at 2236.122 kb on - strand at 2236.127 kb on - strand at 2236.191 kb on - strand at 2236.206 kb on - strand at 2236.411 kb on - strand, within PGA1_c21580 at 2236.489 kb on - strand, within PGA1_c21580 at 2236.523 kb on + strand, within PGA1_c21580 at 2236.523 kb on + strand, within PGA1_c21580 at 2236.531 kb on - strand, within PGA1_c21580 at 2236.531 kb on - strand, within PGA1_c21580 at 2236.589 kb on + strand, within PGA1_c21580 at 2236.673 kb on + strand, within PGA1_c21580 at 2236.683 kb on + strand, within PGA1_c21580 at 2236.747 kb on - strand, within PGA1_c21580 at 2236.747 kb on - strand, within PGA1_c21580 at 2236.747 kb on - strand, within PGA1_c21580 at 2236.785 kb on - strand, within PGA1_c21580 at 2236.827 kb on - strand at 2237.038 kb on - strand at 2237.091 kb on + strand at 2237.091 kb on + strand at 2237.091 kb on + strand at 2237.098 kb on - strand at 2237.099 kb on - strand at 2237.099 kb on - strand at 2237.099 kb on - strand at 2237.099 kb on - strand at 2237.099 kb on - strand at 2237.099 kb on - strand at 2237.124 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 2,235,355 + -2.3 2,235,410 - -1.7 2,235,457 - +0.7 2,235,457 - -1.3 2,235,916 - PGA1_c21570 0.10 -1.9 2,235,926 - PGA1_c21570 0.17 -1.0 2,235,967 - PGA1_c21570 0.46 -2.5 2,235,979 + PGA1_c21570 0.55 -0.4 2,236,078 + -0.2 2,236,086 - -2.2 2,236,122 - -2.0 2,236,127 - -2.4 2,236,191 - -0.5 2,236,206 - -0.5 2,236,411 - PGA1_c21580 0.16 -0.4 2,236,489 - PGA1_c21580 0.31 +0.3 2,236,523 + PGA1_c21580 0.38 +1.0 2,236,523 + PGA1_c21580 0.38 +1.3 2,236,531 - PGA1_c21580 0.39 +1.1 2,236,531 - PGA1_c21580 0.39 +0.5 2,236,589 + PGA1_c21580 0.51 +0.8 2,236,673 + PGA1_c21580 0.67 -1.0 2,236,683 + PGA1_c21580 0.69 +0.3 2,236,747 - PGA1_c21580 0.81 +1.1 2,236,747 - PGA1_c21580 0.81 +0.8 2,236,747 - PGA1_c21580 0.81 +1.0 2,236,785 - PGA1_c21580 0.88 +0.7 2,236,827 - +1.1 2,237,038 - -0.5 2,237,091 + +0.0 2,237,091 + -0.2 2,237,091 + +0.2 2,237,098 - -0.0 2,237,099 - -0.4 2,237,099 - +0.1 2,237,099 - -0.5 2,237,099 - +0.6 2,237,099 - +0.2 2,237,099 - -0.1 2,237,124 - -0.6
Or see this region's nucleotide sequence