Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2042 and HP15_2043 are separated by 18 nucleotides HP15_2043 and HP15_2044 are separated by 25 nucleotides HP15_2044 and HP15_2045 are separated by 208 nucleotides HP15_2045 and HP15_2046 are separated by 13 nucleotides
HP15_2042: HP15_2042 - crossover junction endodeoxyribonuclease RuvC, at 2,141,033 to 2,141,560
_2042
HP15_2043: HP15_2043 - protein YebC, at 2,141,579 to 2,142,322
_2043
HP15_2044: HP15_2044 - aspartyl-tRNA synthetase, at 2,142,348 to 2,144,156
_2044
HP15_2045: HP15_2045 - DNA-binding transcriptional repressor FabR, at 2,144,365 to 2,144,982
_2045
HP15_2046: HP15_2046 - histidine triad (HIT) protein, at 2,144,996 to 2,145,436
_2046
Position (kb)
2142
2143
2144
2145 Strain fitness (log2 ratio)
-1
0
1 at 2141.585 kb on - strand at 2141.736 kb on - strand, within HP15_2043 at 2141.874 kb on - strand, within HP15_2043 at 2141.903 kb on + strand, within HP15_2043 at 2142.056 kb on - strand, within HP15_2043 at 2142.219 kb on + strand, within HP15_2043 at 2142.408 kb on - strand at 2144.569 kb on + strand, within HP15_2045 at 2144.588 kb on - strand, within HP15_2045 at 2144.715 kb on + strand, within HP15_2045 at 2144.800 kb on + strand, within HP15_2045 at 2144.910 kb on + strand, within HP15_2045 at 2144.930 kb on - strand at 2144.964 kb on - strand at 2144.989 kb on - strand at 2145.099 kb on + strand, within HP15_2046 at 2145.100 kb on + strand, within HP15_2046 at 2145.128 kb on - strand, within HP15_2046 at 2145.128 kb on - strand, within HP15_2046
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 2,141,585 - +1.3 2,141,736 - HP15_2043 0.21 +0.8 2,141,874 - HP15_2043 0.40 +0.2 2,141,903 + HP15_2043 0.44 +0.7 2,142,056 - HP15_2043 0.64 +0.1 2,142,219 + HP15_2043 0.86 -0.3 2,142,408 - +0.7 2,144,569 + HP15_2045 0.33 +0.8 2,144,588 - HP15_2045 0.36 +0.7 2,144,715 + HP15_2045 0.57 +0.7 2,144,800 + HP15_2045 0.70 +1.1 2,144,910 + HP15_2045 0.88 +0.4 2,144,930 - +0.4 2,144,964 - +0.9 2,144,989 - -0.2 2,145,099 + HP15_2046 0.23 -1.2 2,145,100 + HP15_2046 0.24 -0.3 2,145,128 - HP15_2046 0.30 +0.8 2,145,128 - HP15_2046 0.30 +0.0
Or see this region's nucleotide sequence