Strain Fitness in Marinobacter adhaerens HP15 around HP15_2041

Experiment: m.b. Aluminum chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2040 and HP15_2041 are separated by 120 nucleotidesHP15_2041 and HP15_2042 are separated by 30 nucleotidesHP15_2042 and HP15_2043 are separated by 18 nucleotides HP15_2040: HP15_2040 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,139,209 to 2,140,252 _2040 HP15_2041: HP15_2041 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,140,373 to 2,141,002 _2041 HP15_2042: HP15_2042 - crossover junction endodeoxyribonuclease RuvC, at 2,141,033 to 2,141,560 _2042 HP15_2043: HP15_2043 - protein YebC, at 2,141,579 to 2,142,322 _2043 Position (kb) 2140 2141 2142Strain fitness (log2 ratio) -1 0 1at 2140.344 kb on + strandat 2140.344 kb on + strandat 2141.021 kb on + strandat 2141.585 kb on - strandat 2141.736 kb on - strand, within HP15_2043at 2141.874 kb on - strand, within HP15_2043at 2141.903 kb on + strand, within HP15_2043

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
remove
2,140,344 + -1.0
2,140,344 + -0.2
2,141,021 + -0.5
2,141,585 - +1.3
2,141,736 - HP15_2043 0.21 +0.8
2,141,874 - HP15_2043 0.40 +0.2
2,141,903 + HP15_2043 0.44 +0.7

Or see this region's nucleotide sequence