Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21160 and PGA1_c21170 are separated by 72 nucleotides PGA1_c21170 and PGA1_c21180 are separated by 12 nucleotides PGA1_c21180 and PGA1_c21190 are separated by 300 nucleotides
PGA1_c21160: PGA1_c21160 - putative metallopeptidase, at 2,190,966 to 2,192,123
_c21160
PGA1_c21170: PGA1_c21170 - dihydrofolate reductase FolA, at 2,192,196 to 2,192,672
_c21170
PGA1_c21180: PGA1_c21180 - thymidylate synthase ThyA, at 2,192,685 to 2,193,518
_c21180
PGA1_c21190: PGA1_c21190 - hypothetical protein, at 2,193,819 to 2,194,757
_c21190
Position (kb)
2192
2193
2194 Strain fitness (log2 ratio)
-2
-1
0
1 at 2191.699 kb on + strand, within PGA1_c21160 at 2191.715 kb on + strand, within PGA1_c21160 at 2191.812 kb on - strand, within PGA1_c21160 at 2191.921 kb on + strand, within PGA1_c21160 at 2191.927 kb on + strand, within PGA1_c21160 at 2191.935 kb on - strand, within PGA1_c21160 at 2191.954 kb on - strand, within PGA1_c21160 at 2191.954 kb on - strand, within PGA1_c21160 at 2191.995 kb on - strand, within PGA1_c21160 at 2192.023 kb on - strand at 2192.133 kb on + strand at 2192.672 kb on + strand at 2192.680 kb on - strand at 2192.680 kb on - strand at 2193.614 kb on - strand at 2193.668 kb on - strand at 2193.668 kb on - strand at 2193.668 kb on - strand at 2193.687 kb on - strand at 2193.774 kb on + strand at 2193.840 kb on - strand at 2193.872 kb on - strand at 2193.945 kb on + strand, within PGA1_c21190 at 2194.082 kb on + strand, within PGA1_c21190 at 2194.090 kb on - strand, within PGA1_c21190 at 2194.090 kb on - strand at 2194.090 kb on - strand, within PGA1_c21190 at 2194.090 kb on - strand, within PGA1_c21190 at 2194.091 kb on - strand, within PGA1_c21190 at 2194.092 kb on + strand, within PGA1_c21190 at 2194.092 kb on + strand, within PGA1_c21190 at 2194.092 kb on + strand, within PGA1_c21190 at 2194.092 kb on + strand, within PGA1_c21190 at 2194.092 kb on + strand, within PGA1_c21190 at 2194.092 kb on + strand, within PGA1_c21190 at 2194.095 kb on - strand, within PGA1_c21190 at 2194.205 kb on + strand, within PGA1_c21190 at 2194.288 kb on + strand, within PGA1_c21190 at 2194.293 kb on + strand, within PGA1_c21190 at 2194.368 kb on + strand, within PGA1_c21190 at 2194.390 kb on - strand, within PGA1_c21190 at 2194.490 kb on - strand, within PGA1_c21190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 2,191,699 + PGA1_c21160 0.63 +0.6 2,191,715 + PGA1_c21160 0.65 +0.2 2,191,812 - PGA1_c21160 0.73 -0.1 2,191,921 + PGA1_c21160 0.82 +0.1 2,191,927 + PGA1_c21160 0.83 +0.2 2,191,935 - PGA1_c21160 0.84 +0.2 2,191,954 - PGA1_c21160 0.85 +0.8 2,191,954 - PGA1_c21160 0.85 +0.8 2,191,995 - PGA1_c21160 0.89 +0.3 2,192,023 - +0.6 2,192,133 + -0.3 2,192,672 + +1.3 2,192,680 - +0.5 2,192,680 - +0.2 2,193,614 - -0.2 2,193,668 - -1.5 2,193,668 - -0.3 2,193,668 - -0.2 2,193,687 - -0.4 2,193,774 + -2.5 2,193,840 - -1.6 2,193,872 - +1.0 2,193,945 + PGA1_c21190 0.13 -0.2 2,194,082 + PGA1_c21190 0.28 +0.9 2,194,090 - PGA1_c21190 0.29 +0.4 2,194,090 - +0.3 2,194,090 - PGA1_c21190 0.29 +1.2 2,194,090 - PGA1_c21190 0.29 +1.5 2,194,091 - PGA1_c21190 0.29 +0.2 2,194,092 + PGA1_c21190 0.29 +0.1 2,194,092 + PGA1_c21190 0.29 +0.7 2,194,092 + PGA1_c21190 0.29 +0.7 2,194,092 + PGA1_c21190 0.29 +0.3 2,194,092 + PGA1_c21190 0.29 -0.3 2,194,092 + PGA1_c21190 0.29 -0.4 2,194,095 - PGA1_c21190 0.29 -1.2 2,194,205 + PGA1_c21190 0.41 -0.2 2,194,288 + PGA1_c21190 0.50 -0.1 2,194,293 + PGA1_c21190 0.50 -2.3 2,194,368 + PGA1_c21190 0.58 +1.0 2,194,390 - PGA1_c21190 0.61 +0.4 2,194,490 - PGA1_c21190 0.71 -0.5
Or see this region's nucleotide sequence