Experiment: m.b. Cephalothin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19040 and PGA1_c19050 are separated by 90 nucleotides PGA1_c19050 and PGA1_c19060 are separated by 47 nucleotides
PGA1_c19040: PGA1_c19040 - multidrug resistance protein MdtC, at 1,975,052 to 1,978,858
_c19040
PGA1_c19050: PGA1_c19050 - hypothetical protein, at 1,978,949 to 1,979,176
_c19050
PGA1_c19060: PGA1_c19060 - ABC transporter, ATP-binding protein, at 1,979,224 to 1,981,032
_c19060
Position (kb)
1978
1979
1980 Strain fitness (log2 ratio)
-1
0
1
2 at 1978.177 kb on + strand, within PGA1_c19040 at 1978.185 kb on - strand, within PGA1_c19040 at 1978.185 kb on - strand, within PGA1_c19040 at 1978.233 kb on - strand, within PGA1_c19040 at 1978.317 kb on - strand, within PGA1_c19040 at 1978.380 kb on + strand, within PGA1_c19040 at 1978.526 kb on - strand at 1978.597 kb on + strand at 1978.649 kb on - strand at 1978.782 kb on - strand at 1978.934 kb on - strand at 1978.934 kb on - strand at 1978.939 kb on + strand at 1979.017 kb on - strand, within PGA1_c19050 at 1979.054 kb on + strand, within PGA1_c19050 at 1979.069 kb on + strand, within PGA1_c19050 at 1979.069 kb on + strand, within PGA1_c19050 at 1979.078 kb on + strand, within PGA1_c19050 at 1979.186 kb on + strand at 1979.192 kb on - strand at 1979.192 kb on - strand at 1979.236 kb on - strand at 1979.295 kb on + strand at 1979.349 kb on - strand at 1979.383 kb on + strand at 1979.398 kb on + strand at 1979.406 kb on - strand, within PGA1_c19060 at 1979.406 kb on - strand, within PGA1_c19060 at 1979.511 kb on - strand, within PGA1_c19060 at 1979.534 kb on + strand, within PGA1_c19060 at 1979.578 kb on - strand, within PGA1_c19060 at 1979.651 kb on + strand, within PGA1_c19060 at 1979.651 kb on + strand, within PGA1_c19060 at 1979.659 kb on - strand, within PGA1_c19060 at 1979.659 kb on - strand, within PGA1_c19060 at 1979.710 kb on + strand, within PGA1_c19060 at 1979.853 kb on + strand, within PGA1_c19060 at 1979.894 kb on - strand, within PGA1_c19060 at 1979.902 kb on + strand, within PGA1_c19060 at 1979.963 kb on + strand, within PGA1_c19060 at 1979.979 kb on + strand, within PGA1_c19060 at 1980.119 kb on + strand, within PGA1_c19060 at 1980.121 kb on - strand, within PGA1_c19060 at 1980.152 kb on - strand, within PGA1_c19060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml remove 1,978,177 + PGA1_c19040 0.82 +0.5 1,978,185 - PGA1_c19040 0.82 +0.1 1,978,185 - PGA1_c19040 0.82 +0.1 1,978,233 - PGA1_c19040 0.84 +0.5 1,978,317 - PGA1_c19040 0.86 +1.1 1,978,380 + PGA1_c19040 0.87 -0.6 1,978,526 - -0.7 1,978,597 + +0.7 1,978,649 - +0.8 1,978,782 - +0.1 1,978,934 - +1.2 1,978,934 - +0.5 1,978,939 + -1.6 1,979,017 - PGA1_c19050 0.30 -1.6 1,979,054 + PGA1_c19050 0.46 +1.8 1,979,069 + PGA1_c19050 0.53 +1.3 1,979,069 + PGA1_c19050 0.53 +0.6 1,979,078 + PGA1_c19050 0.57 +0.1 1,979,186 + +0.1 1,979,192 - +1.0 1,979,192 - -0.4 1,979,236 - +1.4 1,979,295 + -0.7 1,979,349 - -0.2 1,979,383 + +0.1 1,979,398 + +0.4 1,979,406 - PGA1_c19060 0.10 -0.1 1,979,406 - PGA1_c19060 0.10 +1.2 1,979,511 - PGA1_c19060 0.16 +0.5 1,979,534 + PGA1_c19060 0.17 -0.4 1,979,578 - PGA1_c19060 0.20 +0.3 1,979,651 + PGA1_c19060 0.24 +0.7 1,979,651 + PGA1_c19060 0.24 +0.4 1,979,659 - PGA1_c19060 0.24 +0.2 1,979,659 - PGA1_c19060 0.24 +1.0 1,979,710 + PGA1_c19060 0.27 +0.9 1,979,853 + PGA1_c19060 0.35 -1.7 1,979,894 - PGA1_c19060 0.37 +0.1 1,979,902 + PGA1_c19060 0.37 +0.1 1,979,963 + PGA1_c19060 0.41 -0.9 1,979,979 + PGA1_c19060 0.42 -0.2 1,980,119 + PGA1_c19060 0.49 -0.1 1,980,121 - PGA1_c19060 0.50 +0.1 1,980,152 - PGA1_c19060 0.51 -0.3
Or see this region's nucleotide sequence