Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16880

Experiment: m.b. Cephalothin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16870 and PGA1_c16880 are separated by 198 nucleotidesPGA1_c16880 and PGA1_c16890 overlap by 4 nucleotides PGA1_c16870: PGA1_c16870 - Uncharacterized protein conserved in bacteria, at 1,761,186 to 1,762,859 _c16870 PGA1_c16880: PGA1_c16880 - anthranilate synthase component II, at 1,763,058 to 1,763,639 _c16880 PGA1_c16890: PGA1_c16890 - anthranilate phosphoribosyltransferase TrpD, at 1,763,636 to 1,764,664 _c16890 Position (kb) 1763 1764Strain fitness (log2 ratio) -1 0 1at 1762.089 kb on - strand, within PGA1_c16870at 1762.089 kb on - strand, within PGA1_c16870at 1762.135 kb on + strand, within PGA1_c16870at 1762.137 kb on - strand, within PGA1_c16870at 1762.143 kb on - strand, within PGA1_c16870at 1762.147 kb on - strand, within PGA1_c16870at 1762.350 kb on + strand, within PGA1_c16870at 1762.374 kb on - strand, within PGA1_c16870at 1762.398 kb on + strand, within PGA1_c16870at 1762.406 kb on - strand, within PGA1_c16870at 1762.445 kb on + strand, within PGA1_c16870at 1762.445 kb on + strand, within PGA1_c16870at 1762.717 kb on + strandat 1762.727 kb on + strandat 1762.859 kb on + strandat 1762.909 kb on - strandat 1762.911 kb on + strandat 1762.914 kb on - strandat 1762.916 kb on + strandat 1762.942 kb on - strandat 1763.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml
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1,762,089 - PGA1_c16870 0.54 +1.3
1,762,089 - PGA1_c16870 0.54 +0.9
1,762,135 + PGA1_c16870 0.57 +0.5
1,762,137 - PGA1_c16870 0.57 +0.7
1,762,143 - PGA1_c16870 0.57 +0.1
1,762,147 - PGA1_c16870 0.57 +0.9
1,762,350 + PGA1_c16870 0.70 +1.4
1,762,374 - PGA1_c16870 0.71 +1.5
1,762,398 + PGA1_c16870 0.72 +1.4
1,762,406 - PGA1_c16870 0.73 +1.0
1,762,445 + PGA1_c16870 0.75 +0.7
1,762,445 + PGA1_c16870 0.75 -0.9
1,762,717 + +0.5
1,762,727 + +1.1
1,762,859 + +1.0
1,762,909 - +0.1
1,762,911 + +0.4
1,762,914 - -0.7
1,762,916 + +1.0
1,762,942 - +0.9
1,763,012 - -0.4

Or see this region's nucleotide sequence