Experiment: m.b. Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1568 and HP15_1569 are separated by 7 nucleotides HP15_1569 and HP15_1570 are separated by 582 nucleotides
HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485
_1568
HP15_1569: HP15_1569 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, at 1,649,493 to 1,650,071
_1569
HP15_1570: HP15_1570 - mammalian cell entry related domain protein, at 1,650,654 to 1,651,592
_1570
Position (kb)
1649
1650
1651 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1648.540 kb on + strand, within HP15_1568 at 1648.600 kb on + strand, within HP15_1568 at 1648.637 kb on + strand, within HP15_1568 at 1649.152 kb on - strand, within HP15_1568 at 1649.395 kb on + strand at 1650.070 kb on + strand at 1650.073 kb on - strand at 1650.120 kb on - strand at 1650.140 kb on + strand at 1650.192 kb on + strand at 1650.199 kb on - strand at 1650.286 kb on + strand at 1650.359 kb on + strand at 1650.373 kb on + strand at 1650.397 kb on - strand at 1650.422 kb on + strand at 1650.557 kb on - strand at 1650.604 kb on + strand at 1650.604 kb on + strand at 1650.609 kb on + strand at 1650.746 kb on + strand at 1650.761 kb on + strand, within HP15_1570 at 1650.790 kb on - strand, within HP15_1570 at 1650.848 kb on + strand, within HP15_1570 at 1650.853 kb on + strand, within HP15_1570 at 1651.006 kb on + strand, within HP15_1570
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM remove 1,648,540 + HP15_1568 0.49 -0.5 1,648,600 + HP15_1568 0.52 +1.9 1,648,637 + HP15_1568 0.54 +0.0 1,649,152 - HP15_1568 0.82 -2.0 1,649,395 + -1.4 1,650,070 + +0.0 1,650,073 - -0.2 1,650,120 - +0.2 1,650,140 + -0.1 1,650,192 + +0.8 1,650,199 - -0.1 1,650,286 + -0.4 1,650,359 + +0.1 1,650,373 + +0.2 1,650,397 - -1.4 1,650,422 + -0.4 1,650,557 - +0.7 1,650,604 + +0.4 1,650,604 + +0.1 1,650,609 + -0.2 1,650,746 + +0.0 1,650,761 + HP15_1570 0.11 +1.0 1,650,790 - HP15_1570 0.14 +0.2 1,650,848 + HP15_1570 0.21 -0.2 1,650,853 + HP15_1570 0.21 +0.1 1,651,006 + HP15_1570 0.37 -1.0
Or see this region's nucleotide sequence