Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14210

Experiment: m.b. Cephalothin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14200 and PGA1_c14210 are separated by 147 nucleotidesPGA1_c14210 and PGA1_c14220 are separated by 291 nucleotidesPGA1_c14220 and PGA1_c14230 are separated by 9 nucleotides PGA1_c14200: PGA1_c14200 - tRNA delta(2)-isopentenylpyrophosphate transferase MiaA, at 1,475,046 to 1,475,918 _c14200 PGA1_c14210: PGA1_c14210 - uridylate kinase PyrH, at 1,476,066 to 1,476,815 _c14210 PGA1_c14220: PGA1_c14220 - ribosome-recycling factor Frr, at 1,477,107 to 1,477,670 _c14220 PGA1_c14230: PGA1_c14230 - undecaprenyl pyrophosphate synthetase UppS, at 1,477,680 to 1,478,438 _c14230 Position (kb) 1476 1477Strain fitness (log2 ratio) -2 -1 0 1at 1475.957 kb on + strandat 1475.957 kb on + strandat 1475.957 kb on + strandat 1475.960 kb on - strandat 1475.965 kb on - strandat 1475.997 kb on + strandat 1476.812 kb on - strandat 1476.956 kb on + strandat 1476.979 kb on + strandat 1476.987 kb on - strandat 1477.041 kb on + strandat 1477.090 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml
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1,475,957 + +0.6
1,475,957 + -0.5
1,475,957 + -1.3
1,475,960 - +0.1
1,475,965 - +0.1
1,475,997 + -0.1
1,476,812 - -2.7
1,476,956 + -0.6
1,476,979 + -0.4
1,476,987 - +0.4
1,477,041 + +0.4
1,477,090 + -0.6

Or see this region's nucleotide sequence