Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11530

Experiment: m.b. Cephalothin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11520 and PGA1_c11530 overlap by 1 nucleotidesPGA1_c11530 and PGA1_c11540 are separated by 93 nucleotides PGA1_c11520: PGA1_c11520 - gamma-glutamylputrescine synthetase PuuA, at 1,191,266 to 1,192,624 _c11520 PGA1_c11530: PGA1_c11530 - putative glutamine amidotransferase class I, at 1,192,624 to 1,193,304 _c11530 PGA1_c11540: PGA1_c11540 - gamma-glutamylputrescine synthetase PuuA, at 1,193,398 to 1,194,744 _c11540 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -2 -1 0 1 2at 1191.877 kb on - strand, within PGA1_c11520at 1191.928 kb on + strand, within PGA1_c11520at 1191.928 kb on - strand, within PGA1_c11520at 1192.012 kb on + strand, within PGA1_c11520at 1192.014 kb on - strand, within PGA1_c11520at 1192.034 kb on + strand, within PGA1_c11520at 1192.034 kb on + strand, within PGA1_c11520at 1192.034 kb on + strand, within PGA1_c11520at 1192.034 kb on + strand, within PGA1_c11520at 1192.034 kb on + strand, within PGA1_c11520at 1192.042 kb on - strand, within PGA1_c11520at 1192.101 kb on + strand, within PGA1_c11520at 1192.167 kb on + strand, within PGA1_c11520at 1192.168 kb on + strand, within PGA1_c11520at 1192.234 kb on - strand, within PGA1_c11520at 1192.241 kb on + strand, within PGA1_c11520at 1192.244 kb on - strand, within PGA1_c11520at 1192.259 kb on - strand, within PGA1_c11520at 1192.281 kb on - strand, within PGA1_c11520at 1192.349 kb on - strand, within PGA1_c11520at 1192.365 kb on + strand, within PGA1_c11520at 1192.509 kb on + strandat 1192.517 kb on - strandat 1192.524 kb on + strandat 1192.583 kb on + strandat 1192.591 kb on - strandat 1192.591 kb on - strandat 1192.593 kb on + strandat 1192.620 kb on + strandat 1192.693 kb on - strand, within PGA1_c11530at 1192.736 kb on - strand, within PGA1_c11530at 1192.802 kb on + strand, within PGA1_c11530at 1192.802 kb on + strand, within PGA1_c11530at 1192.802 kb on + strand, within PGA1_c11530at 1192.802 kb on + strand, within PGA1_c11530at 1192.802 kb on + strand, within PGA1_c11530at 1192.802 kb on + strand, within PGA1_c11530at 1192.802 kb on + strand, within PGA1_c11530at 1192.802 kb on - strand, within PGA1_c11530at 1192.810 kb on - strand, within PGA1_c11530at 1192.810 kb on - strand, within PGA1_c11530at 1192.810 kb on - strand, within PGA1_c11530at 1192.810 kb on - strand, within PGA1_c11530at 1192.879 kb on - strand, within PGA1_c11530at 1192.879 kb on - strand, within PGA1_c11530at 1192.883 kb on + strand, within PGA1_c11530at 1192.958 kb on + strand, within PGA1_c11530at 1193.001 kb on + strand, within PGA1_c11530at 1193.016 kb on - strand, within PGA1_c11530at 1193.126 kb on + strand, within PGA1_c11530at 1193.189 kb on - strand, within PGA1_c11530at 1193.189 kb on - strand, within PGA1_c11530at 1193.263 kb on + strandat 1193.776 kb on + strand, within PGA1_c11540

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.001 mg/ml
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1,191,877 - PGA1_c11520 0.45 +1.0
1,191,928 + PGA1_c11520 0.49 -0.1
1,191,928 - PGA1_c11520 0.49 -0.8
1,192,012 + PGA1_c11520 0.55 +0.5
1,192,014 - PGA1_c11520 0.55 +1.9
1,192,034 + PGA1_c11520 0.57 -0.0
1,192,034 + PGA1_c11520 0.57 +1.6
1,192,034 + PGA1_c11520 0.57 +0.7
1,192,034 + PGA1_c11520 0.57 +1.0
1,192,034 + PGA1_c11520 0.57 -1.7
1,192,042 - PGA1_c11520 0.57 +0.4
1,192,101 + PGA1_c11520 0.61 -1.1
1,192,167 + PGA1_c11520 0.66 -1.8
1,192,168 + PGA1_c11520 0.66 +0.0
1,192,234 - PGA1_c11520 0.71 -0.1
1,192,241 + PGA1_c11520 0.72 -0.8
1,192,244 - PGA1_c11520 0.72 +0.1
1,192,259 - PGA1_c11520 0.73 -1.0
1,192,281 - PGA1_c11520 0.75 -0.9
1,192,349 - PGA1_c11520 0.80 -0.2
1,192,365 + PGA1_c11520 0.81 -1.1
1,192,509 + +0.2
1,192,517 - -0.5
1,192,524 + -0.5
1,192,583 + -0.0
1,192,591 - -0.8
1,192,591 - -1.4
1,192,593 + +0.5
1,192,620 + -0.2
1,192,693 - PGA1_c11530 0.10 -1.6
1,192,736 - PGA1_c11530 0.16 -0.3
1,192,802 + PGA1_c11530 0.26 +0.7
1,192,802 + PGA1_c11530 0.26 -0.4
1,192,802 + PGA1_c11530 0.26 -0.3
1,192,802 + PGA1_c11530 0.26 -0.3
1,192,802 + PGA1_c11530 0.26 +0.0
1,192,802 + PGA1_c11530 0.26 +1.1
1,192,802 + PGA1_c11530 0.26 +0.3
1,192,802 - PGA1_c11530 0.26 -0.7
1,192,810 - PGA1_c11530 0.27 -0.6
1,192,810 - PGA1_c11530 0.27 -1.7
1,192,810 - PGA1_c11530 0.27 -0.3
1,192,810 - PGA1_c11530 0.27 -0.1
1,192,879 - PGA1_c11530 0.37 +1.3
1,192,879 - PGA1_c11530 0.37 +0.5
1,192,883 + PGA1_c11530 0.38 +1.0
1,192,958 + PGA1_c11530 0.49 -0.9
1,193,001 + PGA1_c11530 0.55 -0.3
1,193,016 - PGA1_c11530 0.58 -0.9
1,193,126 + PGA1_c11530 0.74 +0.5
1,193,189 - PGA1_c11530 0.83 -0.0
1,193,189 - PGA1_c11530 0.83 +0.1
1,193,263 + +1.1
1,193,776 + PGA1_c11540 0.28 +0.7

Or see this region's nucleotide sequence