Strain Fitness in Marinobacter adhaerens HP15 around HP15_104

Experiment: m.b. Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_103 and HP15_104 are separated by 30 nucleotidesHP15_104 and HP15_105 are separated by 186 nucleotidesHP15_105 and HP15_106 are separated by 432 nucleotides HP15_103: HP15_103 - conserved hypothetical protein, secreted, at 106,039 to 107,577 _103 HP15_104: HP15_104 - integral membrane sensor signal transduction histidine kinase, at 107,608 to 108,921 _104 HP15_105: HP15_105 - conserved hypothetical protein, at 109,108 to 109,308 _105 HP15_106: HP15_106 - conserved hypothetical protein, secreted, at 109,741 to 110,991 _106 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1 2at 106.631 kb on + strand, within HP15_103at 106.729 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.732 kb on + strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.740 kb on - strand, within HP15_103at 106.756 kb on - strand, within HP15_103at 106.895 kb on + strand, within HP15_103at 106.903 kb on + strand, within HP15_103at 106.978 kb on + strand, within HP15_103at 106.978 kb on + strand, within HP15_103at 106.978 kb on + strand, within HP15_103at 106.978 kb on + strand, within HP15_103at 106.981 kb on - strand, within HP15_103at 106.986 kb on - strand, within HP15_103at 106.986 kb on - strand, within HP15_103at 107.027 kb on + strand, within HP15_103at 107.027 kb on + strand, within HP15_103at 107.027 kb on + strand, within HP15_103at 107.027 kb on + strand, within HP15_103at 107.035 kb on - strand, within HP15_103at 107.035 kb on - strand, within HP15_103at 107.035 kb on - strand, within HP15_103at 107.035 kb on - strand, within HP15_103at 107.037 kb on + strand, within HP15_103at 107.037 kb on + strand, within HP15_103at 107.037 kb on + strand, within HP15_103at 107.037 kb on + strand, within HP15_103at 107.045 kb on - strand, within HP15_103at 107.045 kb on - strand, within HP15_103at 107.101 kb on + strand, within HP15_103at 107.101 kb on + strand, within HP15_103at 107.101 kb on + strand, within HP15_103at 107.106 kb on + strand, within HP15_103at 107.109 kb on - strand, within HP15_103at 107.109 kb on - strand, within HP15_103at 107.112 kb on + strand, within HP15_103at 107.114 kb on - strand, within HP15_103at 107.119 kb on + strand, within HP15_103at 107.119 kb on + strand, within HP15_103at 107.127 kb on - strand, within HP15_103at 107.127 kb on - strand, within HP15_103at 107.127 kb on - strand, within HP15_103at 107.185 kb on + strand, within HP15_103at 107.193 kb on - strand, within HP15_103at 107.256 kb on - strand, within HP15_103at 107.264 kb on - strand, within HP15_103at 107.318 kb on - strand, within HP15_103at 107.469 kb on + strandat 107.474 kb on + strandat 107.477 kb on - strandat 107.648 kb on + strandat 107.655 kb on - strandat 107.656 kb on - strandat 107.675 kb on + strandat 107.715 kb on + strandat 107.715 kb on + strandat 107.723 kb on - strandat 107.787 kb on + strand, within HP15_104at 107.793 kb on + strand, within HP15_104at 107.828 kb on + strand, within HP15_104at 107.894 kb on + strand, within HP15_104at 107.950 kb on + strand, within HP15_104at 107.951 kb on - strand, within HP15_104at 107.992 kb on - strand, within HP15_104at 108.002 kb on + strand, within HP15_104at 108.035 kb on + strand, within HP15_104at 108.143 kb on - strand, within HP15_104at 108.164 kb on + strand, within HP15_104at 108.191 kb on + strand, within HP15_104at 108.222 kb on + strand, within HP15_104at 108.316 kb on - strand, within HP15_104at 108.320 kb on + strand, within HP15_104at 108.447 kb on + strand, within HP15_104at 108.673 kb on - strand, within HP15_104at 108.778 kb on - strand, within HP15_104at 108.785 kb on + strand, within HP15_104at 108.839 kb on + strandat 108.916 kb on + strandat 108.925 kb on - strandat 108.985 kb on + strandat 108.993 kb on - strandat 109.328 kb on + strandat 109.328 kb on + strandat 109.351 kb on - strandat 109.374 kb on - strandat 109.412 kb on + strandat 109.420 kb on - strandat 109.496 kb on + strandat 109.515 kb on + strandat 109.607 kb on - strandat 109.607 kb on - strandat 109.635 kb on + strandat 109.648 kb on + strandat 109.756 kb on - strandat 109.778 kb on + strandat 109.792 kb on + strandat 109.814 kb on - strandat 109.816 kb on + strandat 109.851 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1 mM
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106,631 + HP15_103 0.38 +1.4
106,729 + HP15_103 0.45 -0.9
106,732 + HP15_103 0.45 -0.2
106,732 + HP15_103 0.45 +0.2
106,732 + HP15_103 0.45 +0.7
106,732 + HP15_103 0.45 -1.1
106,740 - HP15_103 0.46 -0.5
106,740 - HP15_103 0.46 -0.2
106,740 - HP15_103 0.46 -0.3
106,740 - HP15_103 0.46 -0.3
106,756 - HP15_103 0.47 -0.0
106,895 + HP15_103 0.56 -1.3
106,903 + HP15_103 0.56 -0.1
106,978 + HP15_103 0.61 -0.1
106,978 + HP15_103 0.61 -0.1
106,978 + HP15_103 0.61 +0.6
106,978 + HP15_103 0.61 +1.0
106,981 - HP15_103 0.61 +0.5
106,986 - HP15_103 0.62 -0.2
106,986 - HP15_103 0.62 +0.1
107,027 + HP15_103 0.64 -1.7
107,027 + HP15_103 0.64 +0.6
107,027 + HP15_103 0.64 -0.2
107,027 + HP15_103 0.64 -0.1
107,035 - HP15_103 0.65 +0.4
107,035 - HP15_103 0.65 +0.9
107,035 - HP15_103 0.65 +0.1
107,035 - HP15_103 0.65 +0.0
107,037 + HP15_103 0.65 -0.1
107,037 + HP15_103 0.65 -0.2
107,037 + HP15_103 0.65 +0.0
107,037 + HP15_103 0.65 +0.7
107,045 - HP15_103 0.65 -0.9
107,045 - HP15_103 0.65 +0.1
107,101 + HP15_103 0.69 +0.4
107,101 + HP15_103 0.69 +0.2
107,101 + HP15_103 0.69 +0.2
107,106 + HP15_103 0.69 +0.8
107,109 - HP15_103 0.70 -0.6
107,109 - HP15_103 0.70 -0.8
107,112 + HP15_103 0.70 +0.2
107,114 - HP15_103 0.70 -0.0
107,119 + HP15_103 0.70 +0.8
107,119 + HP15_103 0.70 -0.3
107,127 - HP15_103 0.71 -0.3
107,127 - HP15_103 0.71 -0.1
107,127 - HP15_103 0.71 -1.2
107,185 + HP15_103 0.74 +0.8
107,193 - HP15_103 0.75 +0.3
107,256 - HP15_103 0.79 -0.2
107,264 - HP15_103 0.80 +0.1
107,318 - HP15_103 0.83 +0.0
107,469 + -0.3
107,474 + +0.4
107,477 - -0.5
107,648 + -0.4
107,655 - -1.5
107,656 - -0.4
107,675 + -0.7
107,715 + -0.4
107,715 + +0.4
107,723 - -0.2
107,787 + HP15_104 0.14 -0.1
107,793 + HP15_104 0.14 +0.5
107,828 + HP15_104 0.17 -0.6
107,894 + HP15_104 0.22 +1.1
107,950 + HP15_104 0.26 +0.6
107,951 - HP15_104 0.26 -0.1
107,992 - HP15_104 0.29 -0.2
108,002 + HP15_104 0.30 +0.3
108,035 + HP15_104 0.32 +0.1
108,143 - HP15_104 0.41 -0.3
108,164 + HP15_104 0.42 -1.1
108,191 + HP15_104 0.44 -0.4
108,222 + HP15_104 0.47 -0.1
108,316 - HP15_104 0.54 +0.3
108,320 + HP15_104 0.54 -0.2
108,447 + HP15_104 0.64 -0.1
108,673 - HP15_104 0.81 -0.3
108,778 - HP15_104 0.89 +0.0
108,785 + HP15_104 0.90 -0.3
108,839 + -0.4
108,916 + +2.0
108,925 - -0.0
108,985 + -0.2
108,993 - +0.2
109,328 + -0.2
109,328 + +0.8
109,351 - -0.1
109,374 - +0.3
109,412 + +0.2
109,420 - +0.0
109,496 + -2.1
109,515 + -0.6
109,607 - +0.1
109,607 - +0.0
109,635 + -0.1
109,648 + +0.2
109,756 - +0.5
109,778 + -0.4
109,792 + +0.6
109,814 - -0.8
109,816 + +0.2
109,851 + -0.3

Or see this region's nucleotide sequence