Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0110

Experiment: MoLS4 with L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0108 and DVUA0109 are separated by 8 nucleotidesDVUA0109 and DVUA0110 overlap by 4 nucleotidesDVUA0110 and DVUA0111 overlap by 52 nucleotidesDVUA0111 and DVUA0111.1 are separated by 52 nucleotides DVUA0108: DVUA0108 - hypothetical protein (TIGR), at 145,580 to 146,200 DVUA0108 DVUA0109: DVUA0109 - type III secretion system chaperone, LcrH/SycD family (TIGR), at 146,209 to 146,709 DVUA0109 DVUA0110: DVUA0110 - type III secretion system target, YopB family (TIGR), at 146,706 to 147,713 DVUA0110 DVUA0111: DVUA0111 - type III secretion system protein, IpaC family, putative (TIGR), at 147,662 to 148,558 DVUA0111 DVUA0111.1: DVUA0111.1 - SEED: Tir chaperone family protein, at 148,611 to 149,066 DVUA0111.1 Position (kb) 146 147 148Strain fitness (log2 ratio) -1 0 1at 145.740 kb on + strand, within DVUA0108at 145.766 kb on - strand, within DVUA0108at 145.838 kb on + strand, within DVUA0108at 145.875 kb on + strand, within DVUA0108at 145.906 kb on - strand, within DVUA0108at 145.987 kb on + strand, within DVUA0108at 146.011 kb on + strand, within DVUA0108at 146.011 kb on + strand, within DVUA0108at 146.018 kb on + strand, within DVUA0108at 146.044 kb on + strand, within DVUA0108at 146.071 kb on - strand, within DVUA0108at 146.089 kb on - strand, within DVUA0108at 146.112 kb on - strand, within DVUA0108at 146.127 kb on - strand, within DVUA0108at 146.127 kb on - strand, within DVUA0108at 146.137 kb on + strand, within DVUA0108at 146.228 kb on - strandat 146.307 kb on + strand, within DVUA0109at 146.359 kb on - strand, within DVUA0109at 146.359 kb on - strand, within DVUA0109at 146.400 kb on - strand, within DVUA0109at 146.431 kb on + strand, within DVUA0109at 146.447 kb on + strand, within DVUA0109at 146.466 kb on + strand, within DVUA0109at 146.567 kb on + strand, within DVUA0109at 146.585 kb on - strand, within DVUA0109at 146.614 kb on - strand, within DVUA0109at 146.661 kb on + strandat 146.661 kb on + strandat 146.674 kb on - strandat 146.767 kb on + strandat 146.767 kb on + strandat 146.767 kb on + strandat 146.808 kb on + strand, within DVUA0110at 146.815 kb on - strand, within DVUA0110at 146.856 kb on + strand, within DVUA0110at 146.892 kb on + strand, within DVUA0110at 146.962 kb on - strand, within DVUA0110at 147.177 kb on + strand, within DVUA0110at 147.185 kb on - strand, within DVUA0110at 147.208 kb on - strand, within DVUA0110at 147.244 kb on - strand, within DVUA0110at 147.257 kb on + strand, within DVUA0110at 147.290 kb on - strand, within DVUA0110at 147.320 kb on - strand, within DVUA0110at 147.336 kb on - strand, within DVUA0110at 147.383 kb on + strand, within DVUA0110at 147.383 kb on + strand, within DVUA0110at 147.391 kb on - strand, within DVUA0110at 147.416 kb on - strand, within DVUA0110at 147.444 kb on - strand, within DVUA0110at 147.471 kb on + strand, within DVUA0110at 147.471 kb on + strand, within DVUA0110at 147.476 kb on + strand, within DVUA0110at 147.476 kb on + strand, within DVUA0110at 147.672 kb on - strandat 147.679 kb on + strandat 147.689 kb on - strandat 147.849 kb on - strand, within DVUA0111at 147.960 kb on - strand, within DVUA0111at 147.975 kb on + strand, within DVUA0111at 148.051 kb on + strand, within DVUA0111at 148.057 kb on + strand, within DVUA0111at 148.118 kb on - strand, within DVUA0111at 148.140 kb on - strand, within DVUA0111at 148.144 kb on + strand, within DVUA0111at 148.209 kb on - strand, within DVUA0111at 148.210 kb on - strand, within DVUA0111at 148.297 kb on - strand, within DVUA0111at 148.307 kb on + strand, within DVUA0111at 148.350 kb on + strand, within DVUA0111at 148.429 kb on + strand, within DVUA0111at 148.482 kb on - strandat 148.537 kb on - strandat 148.577 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Lysine (N)
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145,740 + DVUA0108 0.26 -1.2
145,766 - DVUA0108 0.30 +0.2
145,838 + DVUA0108 0.42 -0.4
145,875 + DVUA0108 0.48 +0.1
145,906 - DVUA0108 0.52 +0.1
145,987 + DVUA0108 0.66 -0.0
146,011 + DVUA0108 0.69 +0.6
146,011 + DVUA0108 0.69 +0.3
146,018 + DVUA0108 0.71 +0.2
146,044 + DVUA0108 0.75 +0.1
146,071 - DVUA0108 0.79 -0.5
146,089 - DVUA0108 0.82 +0.2
146,112 - DVUA0108 0.86 +0.3
146,127 - DVUA0108 0.88 +0.2
146,127 - DVUA0108 0.88 +0.1
146,137 + DVUA0108 0.90 -0.6
146,228 - -0.4
146,307 + DVUA0109 0.20 -1.5
146,359 - DVUA0109 0.30 -0.7
146,359 - DVUA0109 0.30 +1.7
146,400 - DVUA0109 0.38 -1.0
146,431 + DVUA0109 0.44 +1.6
146,447 + DVUA0109 0.48 -0.2
146,466 + DVUA0109 0.51 +0.3
146,567 + DVUA0109 0.71 +0.1
146,585 - DVUA0109 0.75 -0.0
146,614 - DVUA0109 0.81 -0.7
146,661 + -0.5
146,661 + +0.1
146,674 - +0.1
146,767 + -0.1
146,767 + -0.7
146,767 + -1.0
146,808 + DVUA0110 0.10 +0.5
146,815 - DVUA0110 0.11 +0.9
146,856 + DVUA0110 0.15 +0.1
146,892 + DVUA0110 0.18 -1.3
146,962 - DVUA0110 0.25 -0.8
147,177 + DVUA0110 0.47 -0.2
147,185 - DVUA0110 0.48 +0.0
147,208 - DVUA0110 0.50 +0.3
147,244 - DVUA0110 0.53 +0.4
147,257 + DVUA0110 0.55 -0.7
147,290 - DVUA0110 0.58 +0.2
147,320 - DVUA0110 0.61 -0.1
147,336 - DVUA0110 0.62 +0.1
147,383 + DVUA0110 0.67 -0.3
147,383 + DVUA0110 0.67 +0.8
147,391 - DVUA0110 0.68 +0.2
147,416 - DVUA0110 0.70 -0.2
147,444 - DVUA0110 0.73 -0.1
147,471 + DVUA0110 0.76 -0.1
147,471 + DVUA0110 0.76 +0.1
147,476 + DVUA0110 0.76 +0.9
147,476 + DVUA0110 0.76 -0.5
147,672 - +0.7
147,679 + +1.6
147,689 - +0.1
147,849 - DVUA0111 0.21 +0.1
147,960 - DVUA0111 0.33 +0.5
147,975 + DVUA0111 0.35 -0.1
148,051 + DVUA0111 0.43 -0.2
148,057 + DVUA0111 0.44 -0.8
148,118 - DVUA0111 0.51 +1.1
148,140 - DVUA0111 0.53 -0.8
148,144 + DVUA0111 0.54 +0.1
148,209 - DVUA0111 0.61 -1.4
148,210 - DVUA0111 0.61 -1.0
148,297 - DVUA0111 0.71 +0.7
148,307 + DVUA0111 0.72 -0.6
148,350 + DVUA0111 0.77 -0.1
148,429 + DVUA0111 0.86 +0.0
148,482 - +0.2
148,537 - -0.4
148,577 + -0.4

Or see this region's nucleotide sequence