Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0148

Experiment: MoLS4 with L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0147 and DVUA0148 are separated by 7 nucleotidesDVUA0148 and DVUA0149 are separated by 31 nucleotides DVUA0147: DVUA0147 - conserved hypothetical protein (TIGR), at 192,334 to 193,575 DVUA0147 DVUA0148: DVUA0148 - major facilitator superfamily protein (TIGR), at 193,583 to 196,600 DVUA0148 DVUA0149: DVUA0149 - hypothetical protein (TIGR), at 196,632 to 198,416 DVUA0149 Position (kb) 193 194 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 192.602 kb on + strand, within DVUA0147at 192.620 kb on - strand, within DVUA0147at 192.638 kb on + strand, within DVUA0147at 192.710 kb on + strand, within DVUA0147at 192.725 kb on - strand, within DVUA0147at 192.831 kb on - strand, within DVUA0147at 192.847 kb on + strand, within DVUA0147at 192.847 kb on + strand, within DVUA0147at 192.847 kb on + strand, within DVUA0147at 192.847 kb on + strand, within DVUA0147at 192.855 kb on - strand, within DVUA0147at 192.885 kb on - strand, within DVUA0147at 192.912 kb on - strand, within DVUA0147at 192.934 kb on + strand, within DVUA0147at 192.942 kb on - strand, within DVUA0147at 192.942 kb on - strand, within DVUA0147at 192.946 kb on + strand, within DVUA0147at 193.005 kb on + strand, within DVUA0147at 193.133 kb on + strand, within DVUA0147at 193.200 kb on + strand, within DVUA0147at 193.201 kb on + strand, within DVUA0147at 193.251 kb on + strand, within DVUA0147at 193.272 kb on + strand, within DVUA0147at 193.279 kb on + strand, within DVUA0147at 193.280 kb on - strand, within DVUA0147at 193.352 kb on + strand, within DVUA0147at 193.360 kb on - strand, within DVUA0147at 193.360 kb on - strand, within DVUA0147at 193.362 kb on + strand, within DVUA0147at 193.370 kb on - strand, within DVUA0147at 193.399 kb on + strand, within DVUA0147at 193.411 kb on + strand, within DVUA0147at 193.423 kb on + strand, within DVUA0147at 193.423 kb on + strand, within DVUA0147at 193.449 kb on + strand, within DVUA0147at 193.596 kb on + strandat 193.605 kb on - strandat 193.628 kb on - strandat 193.643 kb on + strandat 193.702 kb on - strandat 193.711 kb on + strandat 193.730 kb on + strandat 193.730 kb on + strandat 193.730 kb on + strandat 193.738 kb on - strandat 193.738 kb on - strandat 193.867 kb on - strandat 193.872 kb on - strandat 193.924 kb on - strand, within DVUA0148at 193.926 kb on + strand, within DVUA0148at 193.940 kb on + strand, within DVUA0148at 193.940 kb on + strand, within DVUA0148at 194.036 kb on + strand, within DVUA0148at 194.046 kb on - strand, within DVUA0148at 194.053 kb on + strand, within DVUA0148at 194.061 kb on - strand, within DVUA0148at 194.079 kb on + strand, within DVUA0148at 194.079 kb on + strand, within DVUA0148at 194.080 kb on - strand, within DVUA0148at 194.136 kb on + strand, within DVUA0148at 194.171 kb on + strand, within DVUA0148at 194.171 kb on - strand, within DVUA0148at 194.310 kb on + strand, within DVUA0148at 194.380 kb on + strand, within DVUA0148at 194.407 kb on + strand, within DVUA0148at 194.413 kb on - strand, within DVUA0148at 194.423 kb on - strand, within DVUA0148at 194.506 kb on - strand, within DVUA0148at 194.506 kb on - strand, within DVUA0148at 194.552 kb on - strand, within DVUA0148at 194.578 kb on + strand, within DVUA0148at 194.738 kb on - strand, within DVUA0148at 194.782 kb on + strand, within DVUA0148at 194.924 kb on + strand, within DVUA0148at 194.924 kb on + strand, within DVUA0148at 194.932 kb on - strand, within DVUA0148at 194.932 kb on - strand, within DVUA0148at 194.934 kb on + strand, within DVUA0148at 194.936 kb on + strand, within DVUA0148at 194.941 kb on + strand, within DVUA0148at 195.016 kb on + strand, within DVUA0148at 195.124 kb on - strand, within DVUA0148at 195.275 kb on + strand, within DVUA0148at 195.283 kb on - strand, within DVUA0148at 195.412 kb on + strand, within DVUA0148at 195.495 kb on + strand, within DVUA0148at 195.595 kb on + strand, within DVUA0148at 195.685 kb on + strand, within DVUA0148at 195.710 kb on - strand, within DVUA0148at 195.762 kb on + strand, within DVUA0148at 195.857 kb on - strand, within DVUA0148at 195.872 kb on + strand, within DVUA0148at 195.897 kb on + strand, within DVUA0148at 196.014 kb on - strand, within DVUA0148at 196.032 kb on + strand, within DVUA0148at 196.062 kb on + strand, within DVUA0148at 196.118 kb on + strand, within DVUA0148at 196.123 kb on + strand, within DVUA0148at 196.123 kb on + strand, within DVUA0148at 196.131 kb on - strand, within DVUA0148at 196.136 kb on - strand, within DVUA0148at 196.181 kb on - strand, within DVUA0148at 196.181 kb on - strand, within DVUA0148at 196.228 kb on + strand, within DVUA0148at 196.236 kb on - strand, within DVUA0148at 196.236 kb on - strand, within DVUA0148at 196.276 kb on - strand, within DVUA0148at 196.329 kb on + strandat 196.329 kb on + strandat 196.347 kb on - strandat 196.365 kb on - strandat 196.508 kb on - strandat 196.530 kb on - strandat 196.621 kb on - strandat 196.630 kb on - strandat 196.640 kb on - strandat 196.642 kb on + strandat 196.642 kb on + strandat 196.656 kb on + strandat 196.743 kb on - strandat 196.745 kb on + strandat 196.818 kb on - strand, within DVUA0149at 196.820 kb on + strand, within DVUA0149at 196.902 kb on - strand, within DVUA0149at 196.939 kb on - strand, within DVUA0149at 196.957 kb on + strand, within DVUA0149at 197.135 kb on + strand, within DVUA0149at 197.213 kb on + strand, within DVUA0149at 197.228 kb on + strand, within DVUA0149at 197.236 kb on - strand, within DVUA0149at 197.368 kb on - strand, within DVUA0149at 197.386 kb on - strand, within DVUA0149at 197.393 kb on + strand, within DVUA0149at 197.393 kb on + strand, within DVUA0149at 197.493 kb on + strand, within DVUA0149at 197.522 kb on + strand, within DVUA0149at 197.525 kb on - strand, within DVUA0149at 197.536 kb on - strand, within DVUA0149at 197.543 kb on + strand, within DVUA0149at 197.549 kb on - strand, within DVUA0149at 197.551 kb on - strand, within DVUA0149

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Lysine (N)
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192,602 + DVUA0147 0.22 +0.4
192,620 - DVUA0147 0.23 +0.1
192,638 + DVUA0147 0.24 -1.0
192,710 + DVUA0147 0.30 -1.4
192,725 - DVUA0147 0.31 +0.0
192,831 - DVUA0147 0.40 +0.4
192,847 + DVUA0147 0.41 +0.4
192,847 + DVUA0147 0.41 -1.6
192,847 + DVUA0147 0.41 +0.1
192,847 + DVUA0147 0.41 -1.2
192,855 - DVUA0147 0.42 -1.9
192,885 - DVUA0147 0.44 +1.6
192,912 - DVUA0147 0.47 +0.9
192,934 + DVUA0147 0.48 +0.9
192,942 - DVUA0147 0.49 -0.3
192,942 - DVUA0147 0.49 +0.5
192,946 + DVUA0147 0.49 +0.0
193,005 + DVUA0147 0.54 +0.1
193,133 + DVUA0147 0.64 -0.1
193,200 + DVUA0147 0.70 -0.2
193,201 + DVUA0147 0.70 -0.0
193,251 + DVUA0147 0.74 -0.4
193,272 + DVUA0147 0.76 +0.2
193,279 + DVUA0147 0.76 -0.1
193,280 - DVUA0147 0.76 -0.1
193,352 + DVUA0147 0.82 +0.1
193,360 - DVUA0147 0.83 +0.9
193,360 - DVUA0147 0.83 -0.3
193,362 + DVUA0147 0.83 +1.1
193,370 - DVUA0147 0.83 +0.2
193,399 + DVUA0147 0.86 +0.0
193,411 + DVUA0147 0.87 -0.7
193,423 + DVUA0147 0.88 -1.3
193,423 + DVUA0147 0.88 -0.1
193,449 + DVUA0147 0.90 +0.2
193,596 + -0.2
193,605 - +0.4
193,628 - +0.3
193,643 + -0.4
193,702 - +1.1
193,711 + +0.6
193,730 + -0.4
193,730 + +1.1
193,730 + -0.3
193,738 - +0.0
193,738 - +0.9
193,867 - -0.2
193,872 - -0.1
193,924 - DVUA0148 0.11 +0.2
193,926 + DVUA0148 0.11 -0.1
193,940 + DVUA0148 0.12 +0.2
193,940 + DVUA0148 0.12 -0.0
194,036 + DVUA0148 0.15 +0.6
194,046 - DVUA0148 0.15 +0.7
194,053 + DVUA0148 0.16 +0.2
194,061 - DVUA0148 0.16 +0.7
194,079 + DVUA0148 0.16 +1.2
194,079 + DVUA0148 0.16 -1.4
194,080 - DVUA0148 0.16 -0.6
194,136 + DVUA0148 0.18 +0.2
194,171 + DVUA0148 0.19 -1.9
194,171 - DVUA0148 0.19 -0.3
194,310 + DVUA0148 0.24 +0.2
194,380 + DVUA0148 0.26 +0.2
194,407 + DVUA0148 0.27 +0.2
194,413 - DVUA0148 0.28 +1.1
194,423 - DVUA0148 0.28 -0.3
194,506 - DVUA0148 0.31 -0.0
194,506 - DVUA0148 0.31 +0.3
194,552 - DVUA0148 0.32 -0.1
194,578 + DVUA0148 0.33 +2.1
194,738 - DVUA0148 0.38 -0.5
194,782 + DVUA0148 0.40 -1.7
194,924 + DVUA0148 0.44 -0.0
194,924 + DVUA0148 0.44 +1.0
194,932 - DVUA0148 0.45 +0.6
194,932 - DVUA0148 0.45 -0.0
194,934 + DVUA0148 0.45 -0.5
194,936 + DVUA0148 0.45 -0.7
194,941 + DVUA0148 0.45 +0.1
195,016 + DVUA0148 0.47 -2.0
195,124 - DVUA0148 0.51 -0.5
195,275 + DVUA0148 0.56 +0.6
195,283 - DVUA0148 0.56 -0.4
195,412 + DVUA0148 0.61 -2.3
195,495 + DVUA0148 0.63 -0.7
195,595 + DVUA0148 0.67 -0.1
195,685 + DVUA0148 0.70 +0.0
195,710 - DVUA0148 0.70 +0.3
195,762 + DVUA0148 0.72 -1.9
195,857 - DVUA0148 0.75 -2.1
195,872 + DVUA0148 0.76 +1.1
195,897 + DVUA0148 0.77 +0.1
196,014 - DVUA0148 0.81 +0.3
196,032 + DVUA0148 0.81 +0.5
196,062 + DVUA0148 0.82 -1.4
196,118 + DVUA0148 0.84 -0.4
196,123 + DVUA0148 0.84 +0.4
196,123 + DVUA0148 0.84 -1.4
196,131 - DVUA0148 0.84 -0.5
196,136 - DVUA0148 0.85 +1.3
196,181 - DVUA0148 0.86 -0.1
196,181 - DVUA0148 0.86 +0.3
196,228 + DVUA0148 0.88 +0.4
196,236 - DVUA0148 0.88 +0.8
196,236 - DVUA0148 0.88 +0.2
196,276 - DVUA0148 0.89 +0.2
196,329 + -0.7
196,329 + +0.5
196,347 - -0.1
196,365 - +0.3
196,508 - +0.6
196,530 - +0.2
196,621 - -0.2
196,630 - -0.6
196,640 - +0.1
196,642 + +0.2
196,642 + +0.1
196,656 + -0.9
196,743 - -0.8
196,745 + -0.3
196,818 - DVUA0149 0.10 +0.3
196,820 + DVUA0149 0.11 +0.3
196,902 - DVUA0149 0.15 -0.4
196,939 - DVUA0149 0.17 +0.2
196,957 + DVUA0149 0.18 +0.1
197,135 + DVUA0149 0.28 +0.1
197,213 + DVUA0149 0.33 -0.3
197,228 + DVUA0149 0.33 -0.2
197,236 - DVUA0149 0.34 +1.4
197,368 - DVUA0149 0.41 +0.9
197,386 - DVUA0149 0.42 -1.9
197,393 + DVUA0149 0.43 -0.6
197,393 + DVUA0149 0.43 -0.4
197,493 + DVUA0149 0.48 -0.1
197,522 + DVUA0149 0.50 -0.7
197,525 - DVUA0149 0.50 -0.9
197,536 - DVUA0149 0.51 -0.3
197,543 + DVUA0149 0.51 +0.1
197,549 - DVUA0149 0.51 -0.6
197,551 - DVUA0149 0.51 +0.2

Or see this region's nucleotide sequence