Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3389

Experiment: MoLS4 with L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3388 and topA are separated by 132 nucleotidestopA and DORF24761 are separated by 235 nucleotides DVU3388: DVU3388 - lipoprotein, putative (TIGR), at 3,562,683 to 3,563,510 DVU3388 DVU3389: topA - DNA topoisomerase I (TIGR), at 3,563,643 to 3,565,925 topA DORF24761: DORF24761 - SEED: FIG00604061: hypothetical protein, at 3,566,161 to 3,567,015 DORF24761 Position (kb) 3563 3564 3565 3566Strain fitness (log2 ratio) -2 -1 0 1at 3562.655 kb on + strandat 3562.666 kb on + strandat 3562.705 kb on - strandat 3562.707 kb on - strandat 3562.709 kb on + strandat 3562.717 kb on - strandat 3562.747 kb on + strandat 3562.752 kb on - strandat 3562.852 kb on - strand, within DVU3388at 3562.852 kb on - strand, within DVU3388at 3562.888 kb on + strand, within DVU3388at 3562.939 kb on - strand, within DVU3388at 3562.945 kb on + strand, within DVU3388at 3562.945 kb on + strand, within DVU3388at 3562.983 kb on + strand, within DVU3388at 3562.984 kb on + strand, within DVU3388at 3562.992 kb on - strand, within DVU3388at 3563.046 kb on + strand, within DVU3388at 3563.054 kb on + strand, within DVU3388at 3563.081 kb on + strand, within DVU3388at 3563.137 kb on + strand, within DVU3388at 3563.165 kb on - strand, within DVU3388at 3563.187 kb on + strand, within DVU3388at 3563.187 kb on + strand, within DVU3388at 3563.228 kb on - strand, within DVU3388at 3563.265 kb on + strand, within DVU3388at 3563.298 kb on + strand, within DVU3388at 3563.298 kb on - strand, within DVU3388at 3563.298 kb on - strand, within DVU3388at 3563.339 kb on + strand, within DVU3388at 3563.418 kb on - strand, within DVU3388at 3563.435 kb on + strandat 3563.492 kb on + strandat 3563.553 kb on - strandat 3565.779 kb on + strandat 3565.779 kb on + strandat 3565.787 kb on - strandat 3565.787 kb on - strandat 3566.112 kb on - strandat 3566.171 kb on - strandat 3566.184 kb on + strandat 3566.204 kb on + strandat 3566.204 kb on + strandat 3566.230 kb on + strandat 3566.243 kb on + strandat 3566.329 kb on - strand, within DORF24761at 3566.373 kb on - strand, within DORF24761at 3566.378 kb on + strand, within DORF24761at 3566.417 kb on + strand, within DORF24761at 3566.428 kb on + strand, within DORF24761at 3566.428 kb on + strand, within DORF24761at 3566.546 kb on - strand, within DORF24761at 3566.566 kb on + strand, within DORF24761at 3566.584 kb on + strand, within DORF24761at 3566.597 kb on + strand, within DORF24761at 3566.701 kb on + strand, within DORF24761at 3566.816 kb on - strand, within DORF24761

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Lysine (N)
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3,562,655 + -0.4
3,562,666 + -0.2
3,562,705 - +0.0
3,562,707 - -0.1
3,562,709 + +1.6
3,562,717 - -0.4
3,562,747 + -0.0
3,562,752 - -0.1
3,562,852 - DVU3388 0.20 -0.4
3,562,852 - DVU3388 0.20 -0.2
3,562,888 + DVU3388 0.25 +0.1
3,562,939 - DVU3388 0.31 +0.0
3,562,945 + DVU3388 0.32 -0.0
3,562,945 + DVU3388 0.32 -0.2
3,562,983 + DVU3388 0.36 -0.5
3,562,984 + DVU3388 0.36 +0.1
3,562,992 - DVU3388 0.37 -0.5
3,563,046 + DVU3388 0.44 -0.6
3,563,054 + DVU3388 0.45 -0.4
3,563,081 + DVU3388 0.48 +0.2
3,563,137 + DVU3388 0.55 -2.2
3,563,165 - DVU3388 0.58 +0.2
3,563,187 + DVU3388 0.61 -0.1
3,563,187 + DVU3388 0.61 -1.3
3,563,228 - DVU3388 0.66 +0.0
3,563,265 + DVU3388 0.70 +0.0
3,563,298 + DVU3388 0.74 -0.6
3,563,298 - DVU3388 0.74 -0.4
3,563,298 - DVU3388 0.74 -0.9
3,563,339 + DVU3388 0.79 +0.2
3,563,418 - DVU3388 0.89 -0.1
3,563,435 + -0.0
3,563,492 + -0.7
3,563,553 - +0.5
3,565,779 + -0.7
3,565,779 + -1.4
3,565,787 - -1.3
3,565,787 - -0.6
3,566,112 - -2.6
3,566,171 - +0.6
3,566,184 + -2.1
3,566,204 + -1.0
3,566,204 + +0.2
3,566,230 + +0.4
3,566,243 + -0.3
3,566,329 - DORF24761 0.20 -0.1
3,566,373 - DORF24761 0.25 -0.4
3,566,378 + DORF24761 0.25 -0.9
3,566,417 + DORF24761 0.30 -0.5
3,566,428 + DORF24761 0.31 +0.0
3,566,428 + DORF24761 0.31 -1.4
3,566,546 - DORF24761 0.45 -0.4
3,566,566 + DORF24761 0.47 -0.7
3,566,584 + DORF24761 0.49 -1.9
3,566,597 + DORF24761 0.51 -0.4
3,566,701 + DORF24761 0.63 +0.9
3,566,816 - DORF24761 0.77 -0.5

Or see this region's nucleotide sequence