Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2965

Experiment: MoLS4 with L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2963 and DVU2964 are separated by 1 nucleotidesDVU2964 and DVU2965 are separated by 119 nucleotidesDVU2965 and DVU2966 are separated by 198 nucleotidesDVU2966 and DVU2967 are separated by 13 nucleotides DVU2963: DVU2963 - response regulator (TIGR), at 3,070,467 to 3,070,853 DVU2963 DVU2964: DVU2964 - hypothetical protein (TIGR), at 3,070,855 to 3,071,514 DVU2964 DVU2965: DVU2965 - hypothetical protein (TIGR), at 3,071,634 to 3,071,933 DVU2965 DVU2966: DVU2966 - response regulator (TIGR), at 3,072,132 to 3,072,587 DVU2966 DVU2967: DVU2967 - sensor histidine kinase/response regulator (TIGR), at 3,072,601 to 3,073,725 DVU2967 Position (kb) 3071 3072Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3070.743 kb on - strand, within DVU2963at 3070.751 kb on + strand, within DVU2963at 3070.772 kb on + strand, within DVU2963at 3070.813 kb on - strand, within DVU2963at 3070.824 kb on + strandat 3070.908 kb on + strandat 3070.924 kb on - strand, within DVU2964at 3070.948 kb on + strand, within DVU2964at 3071.015 kb on + strand, within DVU2964at 3071.015 kb on + strand, within DVU2964at 3071.218 kb on - strand, within DVU2964at 3071.224 kb on - strand, within DVU2964at 3071.812 kb on + strand, within DVU2965at 3071.812 kb on + strand, within DVU2965at 3071.828 kb on - strand, within DVU2965at 3071.865 kb on + strand, within DVU2965at 3071.865 kb on - strand, within DVU2965at 3071.875 kb on + strand, within DVU2965at 3071.883 kb on - strand, within DVU2965at 3071.916 kb on - strandat 3071.916 kb on - strandat 3071.916 kb on - strandat 3071.977 kb on - strandat 3071.978 kb on + strandat 3071.994 kb on - strandat 3072.001 kb on + strandat 3072.009 kb on - strandat 3072.022 kb on - strandat 3072.122 kb on - strandat 3072.129 kb on + strandat 3072.147 kb on - strandat 3072.178 kb on + strand, within DVU2966at 3072.226 kb on - strand, within DVU2966at 3072.275 kb on + strand, within DVU2966at 3072.319 kb on + strand, within DVU2966at 3072.319 kb on + strand, within DVU2966at 3072.327 kb on + strand, within DVU2966at 3072.335 kb on - strand, within DVU2966at 3072.352 kb on + strand, within DVU2966at 3072.360 kb on - strand, within DVU2966at 3072.460 kb on + strand, within DVU2966at 3072.507 kb on - strand, within DVU2966at 3072.517 kb on - strand, within DVU2966at 3072.520 kb on + strand, within DVU2966at 3072.562 kb on - strandat 3072.587 kb on + strandat 3072.595 kb on - strandat 3072.595 kb on - strandat 3072.677 kb on - strandat 3072.717 kb on + strand, within DVU2967at 3072.776 kb on + strand, within DVU2967at 3072.842 kb on + strand, within DVU2967at 3072.842 kb on + strand, within DVU2967at 3072.876 kb on + strand, within DVU2967at 3072.905 kb on - strand, within DVU2967at 3072.905 kb on - strand, within DVU2967at 3072.927 kb on - strand, within DVU2967

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Lysine (N)
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3,070,743 - DVU2963 0.71 -1.2
3,070,751 + DVU2963 0.73 -0.5
3,070,772 + DVU2963 0.79 -1.7
3,070,813 - DVU2963 0.89 -0.3
3,070,824 + +0.2
3,070,908 + -0.3
3,070,924 - DVU2964 0.10 -2.7
3,070,948 + DVU2964 0.14 -0.6
3,071,015 + DVU2964 0.24 -1.2
3,071,015 + DVU2964 0.24 -2.0
3,071,218 - DVU2964 0.55 -1.5
3,071,224 - DVU2964 0.56 -0.6
3,071,812 + DVU2965 0.59 -0.1
3,071,812 + DVU2965 0.59 -2.2
3,071,828 - DVU2965 0.65 -0.7
3,071,865 + DVU2965 0.77 -0.7
3,071,865 - DVU2965 0.77 -0.0
3,071,875 + DVU2965 0.80 -1.1
3,071,883 - DVU2965 0.83 +0.6
3,071,916 - +0.0
3,071,916 - -0.6
3,071,916 - -0.5
3,071,977 - -0.9
3,071,978 + -0.2
3,071,994 - +0.8
3,072,001 + +0.0
3,072,009 - -0.3
3,072,022 - -0.2
3,072,122 - -0.9
3,072,129 + -2.7
3,072,147 - -3.4
3,072,178 + DVU2966 0.10 -3.0
3,072,226 - DVU2966 0.21 -3.9
3,072,275 + DVU2966 0.31 -2.5
3,072,319 + DVU2966 0.41 -1.9
3,072,319 + DVU2966 0.41 -2.5
3,072,327 + DVU2966 0.43 -2.8
3,072,335 - DVU2966 0.45 -3.3
3,072,352 + DVU2966 0.48 -0.9
3,072,360 - DVU2966 0.50 -2.0
3,072,460 + DVU2966 0.72 -1.2
3,072,507 - DVU2966 0.82 -2.0
3,072,517 - DVU2966 0.84 -2.7
3,072,520 + DVU2966 0.85 -3.3
3,072,562 - -3.0
3,072,587 + -3.6
3,072,595 - -3.1
3,072,595 - -1.9
3,072,677 - -2.2
3,072,717 + DVU2967 0.10 -2.5
3,072,776 + DVU2967 0.16 -3.0
3,072,842 + DVU2967 0.21 -2.1
3,072,842 + DVU2967 0.21 -2.1
3,072,876 + DVU2967 0.24 -2.2
3,072,905 - DVU2967 0.27 -2.1
3,072,905 - DVU2967 0.27 -1.9
3,072,927 - DVU2967 0.29 -3.6

Or see this region's nucleotide sequence