Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1023

Experiment: MoLS4 with L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1022 and DVU1023 are separated by 500 nucleotidesDVU1023 and rluD/coaE are separated by 11 nucleotides DVU1022: DVU1022 - SUF system FeS assembly ATPase SufC, putative (TIGR), at 1,125,448 to 1,126,224 DVU1022 DVU1023: DVU1023 - rhomboid family protein (TIGR), at 1,126,725 to 1,127,465 DVU1023 DVU1024: rluD/coaE - ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR), at 1,127,477 to 1,129,102 rluD/coaE Position (kb) 1126 1127 1128Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1126.466 kb on + strandat 1126.522 kb on - strandat 1126.560 kb on + strandat 1126.588 kb on - strandat 1126.620 kb on - strandat 1126.660 kb on + strandat 1126.796 kb on + strandat 1126.821 kb on + strand, within DVU1023at 1126.834 kb on - strand, within DVU1023at 1127.088 kb on + strand, within DVU1023at 1127.119 kb on - strand, within DVU1023at 1127.128 kb on + strand, within DVU1023at 1127.138 kb on - strand, within DVU1023at 1127.155 kb on + strand, within DVU1023at 1127.243 kb on - strand, within DVU1023at 1127.243 kb on - strand, within DVU1023at 1127.295 kb on + strand, within DVU1023at 1127.295 kb on + strand, within DVU1023at 1127.334 kb on + strand, within DVU1023at 1127.344 kb on + strand, within DVU1023at 1127.393 kb on + strandat 1127.394 kb on + strandat 1127.395 kb on - strandat 1127.401 kb on - strandat 1127.427 kb on - strandat 1127.445 kb on - strandat 1127.456 kb on + strandat 1127.521 kb on - strandat 1128.364 kb on - strand, within rluD/coaE

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Lysine (N)
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1,126,466 + +0.2
1,126,522 - -0.1
1,126,560 + -0.2
1,126,588 - +0.3
1,126,620 - -0.3
1,126,660 + -0.5
1,126,796 + +1.3
1,126,821 + DVU1023 0.13 +0.6
1,126,834 - DVU1023 0.15 -0.9
1,127,088 + DVU1023 0.49 +1.2
1,127,119 - DVU1023 0.53 -0.4
1,127,128 + DVU1023 0.54 -2.8
1,127,138 - DVU1023 0.56 -0.7
1,127,155 + DVU1023 0.58 -0.2
1,127,243 - DVU1023 0.70 -0.0
1,127,243 - DVU1023 0.70 +0.2
1,127,295 + DVU1023 0.77 -1.5
1,127,295 + DVU1023 0.77 -1.6
1,127,334 + DVU1023 0.82 -0.1
1,127,344 + DVU1023 0.84 +0.0
1,127,393 + +0.2
1,127,394 + +0.2
1,127,395 - +0.9
1,127,401 - -0.2
1,127,427 - +0.7
1,127,445 - -0.0
1,127,456 + -1.9
1,127,521 - -1.7
1,128,364 - rluD/coaE DVU1024 0.55 -4.9

Or see this region's nucleotide sequence