Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5139.1 and Xcc-8004.5140.1 overlap by 4 nucleotides Xcc-8004.5140.1 and Xcc-8004.5141.1 are separated by 89 nucleotides Xcc-8004.5141.1 and Xcc-8004.5142.1 are separated by 60 nucleotides
Xcc-8004.5139.1: Xcc-8004.5139.1 - Gfa-like protein, at 4,872,069 to 4,872,503
Xcc-8004.5139.1
Xcc-8004.5140.1: Xcc-8004.5140.1 - Exodeoxyribonuclease III (EC 3.1.11.2), at 4,872,500 to 4,873,279
Xcc-8004.5140.1
Xcc-8004.5141.1: Xcc-8004.5141.1 - FIG01212911: hypothetical protein, at 4,873,369 to 4,873,929
Xcc-8004.5141.1
Xcc-8004.5142.1: Xcc-8004.5142.1 - phospholipase A1, at 4,873,990 to 4,876,299
Xcc-8004.5142.1
Position (kb) 4873
4874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4872.813 kb on + strand, within Xcc-8004.5140.1 at 4872.814 kb on - strand, within Xcc-8004.5140.1 at 4872.927 kb on + strand, within Xcc-8004.5140.1 at 4872.928 kb on - strand, within Xcc-8004.5140.1 at 4872.933 kb on + strand, within Xcc-8004.5140.1 at 4872.934 kb on - strand, within Xcc-8004.5140.1 at 4872.934 kb on - strand, within Xcc-8004.5140.1 at 4872.934 kb on - strand, within Xcc-8004.5140.1 at 4872.934 kb on - strand, within Xcc-8004.5140.1 at 4872.934 kb on - strand, within Xcc-8004.5140.1 at 4872.970 kb on - strand, within Xcc-8004.5140.1 at 4873.395 kb on - strand at 4873.459 kb on + strand, within Xcc-8004.5141.1 at 4873.459 kb on + strand, within Xcc-8004.5141.1 at 4873.459 kb on + strand, within Xcc-8004.5141.1 at 4873.459 kb on + strand, within Xcc-8004.5141.1 at 4873.459 kb on + strand, within Xcc-8004.5141.1 at 4873.459 kb on + strand, within Xcc-8004.5141.1 at 4873.460 kb on - strand, within Xcc-8004.5141.1 at 4873.460 kb on - strand, within Xcc-8004.5141.1 at 4873.460 kb on - strand, within Xcc-8004.5141.1 at 4873.460 kb on - strand, within Xcc-8004.5141.1 at 4873.460 kb on - strand, within Xcc-8004.5141.1 at 4873.460 kb on - strand, within Xcc-8004.5141.1 at 4873.460 kb on - strand, within Xcc-8004.5141.1 at 4873.547 kb on + strand, within Xcc-8004.5141.1 at 4873.547 kb on + strand, within Xcc-8004.5141.1 at 4873.547 kb on + strand, within Xcc-8004.5141.1 at 4873.547 kb on + strand, within Xcc-8004.5141.1 at 4873.547 kb on + strand, within Xcc-8004.5141.1 at 4873.547 kb on + strand, within Xcc-8004.5141.1 at 4873.547 kb on + strand, within Xcc-8004.5141.1 at 4873.548 kb on - strand, within Xcc-8004.5141.1 at 4873.548 kb on - strand, within Xcc-8004.5141.1 at 4873.548 kb on - strand, within Xcc-8004.5141.1 at 4873.981 kb on + strand at 4873.981 kb on + strand at 4873.981 kb on + strand at 4873.982 kb on - strand at 4873.982 kb on - strand at 4873.982 kb on - strand at 4873.982 kb on - strand at 4873.992 kb on - strand at 4874.263 kb on + strand, within Xcc-8004.5142.1 at 4874.263 kb on + strand, within Xcc-8004.5142.1 at 4874.263 kb on + strand, within Xcc-8004.5142.1 at 4874.264 kb on - strand, within Xcc-8004.5142.1 at 4874.506 kb on - strand, within Xcc-8004.5142.1 at 4874.584 kb on + strand, within Xcc-8004.5142.1 at 4874.585 kb on - strand, within Xcc-8004.5142.1 at 4874.718 kb on + strand, within Xcc-8004.5142.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,872,813 + Xcc-8004.5140.1 0.40 +0.2 4,872,814 - Xcc-8004.5140.1 0.40 -1.6 4,872,927 + Xcc-8004.5140.1 0.55 -1.0 4,872,928 - Xcc-8004.5140.1 0.55 +0.9 4,872,933 + Xcc-8004.5140.1 0.56 +0.5 4,872,934 - Xcc-8004.5140.1 0.56 +2.5 4,872,934 - Xcc-8004.5140.1 0.56 -2.3 4,872,934 - Xcc-8004.5140.1 0.56 -1.3 4,872,934 - Xcc-8004.5140.1 0.56 +1.5 4,872,934 - Xcc-8004.5140.1 0.56 -0.5 4,872,970 - Xcc-8004.5140.1 0.60 -0.5 4,873,395 - -1.8 4,873,459 + Xcc-8004.5141.1 0.16 +1.2 4,873,459 + Xcc-8004.5141.1 0.16 -0.3 4,873,459 + Xcc-8004.5141.1 0.16 -2.1 4,873,459 + Xcc-8004.5141.1 0.16 +1.0 4,873,459 + Xcc-8004.5141.1 0.16 +2.5 4,873,459 + Xcc-8004.5141.1 0.16 -3.0 4,873,460 - Xcc-8004.5141.1 0.16 +0.4 4,873,460 - Xcc-8004.5141.1 0.16 -1.8 4,873,460 - Xcc-8004.5141.1 0.16 -0.1 4,873,460 - Xcc-8004.5141.1 0.16 +0.3 4,873,460 - Xcc-8004.5141.1 0.16 -0.6 4,873,460 - Xcc-8004.5141.1 0.16 +0.1 4,873,460 - Xcc-8004.5141.1 0.16 -0.5 4,873,547 + Xcc-8004.5141.1 0.32 -1.8 4,873,547 + Xcc-8004.5141.1 0.32 -2.4 4,873,547 + Xcc-8004.5141.1 0.32 -1.5 4,873,547 + Xcc-8004.5141.1 0.32 +0.2 4,873,547 + Xcc-8004.5141.1 0.32 +0.3 4,873,547 + Xcc-8004.5141.1 0.32 -1.3 4,873,547 + Xcc-8004.5141.1 0.32 -0.7 4,873,548 - Xcc-8004.5141.1 0.32 -1.6 4,873,548 - Xcc-8004.5141.1 0.32 -0.5 4,873,548 - Xcc-8004.5141.1 0.32 +0.1 4,873,981 + +0.5 4,873,981 + -0.7 4,873,981 + -1.3 4,873,982 - -1.4 4,873,982 - -0.3 4,873,982 - -1.0 4,873,982 - +0.6 4,873,992 - +1.0 4,874,263 + Xcc-8004.5142.1 0.12 -0.3 4,874,263 + Xcc-8004.5142.1 0.12 -2.6 4,874,263 + Xcc-8004.5142.1 0.12 +0.2 4,874,264 - Xcc-8004.5142.1 0.12 +1.4 4,874,506 - Xcc-8004.5142.1 0.22 -0.7 4,874,584 + Xcc-8004.5142.1 0.26 +0.5 4,874,585 - Xcc-8004.5142.1 0.26 -2.4 4,874,718 + Xcc-8004.5142.1 0.32 -0.4
Or see this region's nucleotide sequence