Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4977.1 and Xcc-8004.4979.1 are separated by 8 nucleotides
Xcc-8004.4977.1: Xcc-8004.4977.1 - Peptidase, at 4,726,200 to 4,728,008
Xcc-8004.4977.1
Xcc-8004.4979.1: Xcc-8004.4979.1 - Beta-lactamase related protein, at 4,728,017 to 4,728,961
Xcc-8004.4979.1
Position (kb) 4726
4727
4728
4729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4725.245 kb on + strand at 4725.245 kb on + strand at 4725.253 kb on + strand at 4725.253 kb on + strand at 4725.254 kb on - strand at 4725.254 kb on - strand at 4725.254 kb on - strand at 4725.321 kb on + strand at 4725.321 kb on + strand at 4725.321 kb on + strand at 4725.322 kb on - strand at 4725.377 kb on + strand at 4725.378 kb on - strand at 4725.378 kb on - strand at 4725.378 kb on - strand at 4725.378 kb on - strand at 4725.378 kb on - strand at 4725.428 kb on + strand at 4725.429 kb on - strand at 4725.449 kb on + strand at 4725.449 kb on + strand at 4725.449 kb on + strand at 4725.450 kb on - strand at 4725.466 kb on + strand at 4725.466 kb on + strand at 4725.466 kb on + strand at 4725.466 kb on + strand at 4725.466 kb on + strand at 4725.466 kb on + strand at 4725.467 kb on - strand at 4725.467 kb on - strand at 4725.467 kb on - strand at 4725.496 kb on + strand at 4725.496 kb on + strand at 4725.496 kb on + strand at 4725.496 kb on + strand at 4725.496 kb on + strand at 4725.496 kb on + strand at 4725.497 kb on - strand at 4725.497 kb on - strand at 4725.497 kb on - strand at 4725.497 kb on - strand at 4725.616 kb on + strand at 4725.616 kb on + strand at 4725.679 kb on + strand at 4725.679 kb on + strand at 4725.679 kb on + strand at 4725.679 kb on + strand at 4725.680 kb on - strand at 4725.680 kb on - strand at 4725.680 kb on - strand at 4725.680 kb on - strand at 4725.680 kb on - strand at 4725.773 kb on + strand at 4725.928 kb on + strand at 4725.929 kb on - strand at 4725.958 kb on + strand at 4725.958 kb on + strand at 4725.958 kb on + strand at 4725.959 kb on - strand at 4725.959 kb on - strand at 4725.974 kb on + strand at 4725.975 kb on - strand at 4725.975 kb on - strand at 4725.975 kb on - strand at 4725.992 kb on + strand at 4725.992 kb on + strand at 4725.992 kb on + strand at 4725.992 kb on + strand at 4725.992 kb on + strand at 4725.993 kb on - strand at 4725.993 kb on - strand at 4725.993 kb on - strand at 4725.993 kb on - strand at 4725.993 kb on - strand at 4725.993 kb on - strand at 4726.011 kb on + strand at 4726.011 kb on + strand at 4726.011 kb on + strand at 4726.012 kb on - strand at 4726.012 kb on - strand at 4726.012 kb on - strand at 4726.012 kb on - strand at 4726.012 kb on - strand at 4726.012 kb on - strand at 4726.083 kb on - strand at 4726.201 kb on + strand at 4726.201 kb on + strand at 4726.202 kb on - strand at 4726.202 kb on - strand at 4726.303 kb on + strand at 4726.304 kb on - strand at 4726.304 kb on - strand at 4726.304 kb on - strand at 4726.304 kb on - strand at 4726.375 kb on + strand at 4726.376 kb on - strand at 4726.376 kb on - strand at 4726.390 kb on + strand, within Xcc-8004.4977.1 at 4726.390 kb on + strand, within Xcc-8004.4977.1 at 4726.390 kb on + strand, within Xcc-8004.4977.1 at 4726.390 kb on + strand, within Xcc-8004.4977.1 at 4726.390 kb on + strand, within Xcc-8004.4977.1 at 4726.390 kb on + strand, within Xcc-8004.4977.1 at 4726.390 kb on + strand, within Xcc-8004.4977.1 at 4726.391 kb on - strand, within Xcc-8004.4977.1 at 4726.391 kb on - strand, within Xcc-8004.4977.1 at 4726.391 kb on - strand, within Xcc-8004.4977.1 at 4726.391 kb on - strand, within Xcc-8004.4977.1 at 4726.391 kb on - strand, within Xcc-8004.4977.1 at 4726.391 kb on - strand, within Xcc-8004.4977.1 at 4726.394 kb on + strand, within Xcc-8004.4977.1 at 4726.505 kb on - strand, within Xcc-8004.4977.1 at 4726.540 kb on + strand, within Xcc-8004.4977.1 at 4726.540 kb on + strand, within Xcc-8004.4977.1 at 4726.540 kb on + strand, within Xcc-8004.4977.1 at 4726.541 kb on - strand, within Xcc-8004.4977.1 at 4726.541 kb on - strand, within Xcc-8004.4977.1 at 4726.541 kb on - strand, within Xcc-8004.4977.1 at 4726.541 kb on - strand, within Xcc-8004.4977.1 at 4726.703 kb on - strand, within Xcc-8004.4977.1 at 4726.705 kb on + strand, within Xcc-8004.4977.1 at 4726.705 kb on + strand, within Xcc-8004.4977.1 at 4726.705 kb on + strand, within Xcc-8004.4977.1 at 4726.705 kb on + strand, within Xcc-8004.4977.1 at 4726.705 kb on + strand, within Xcc-8004.4977.1 at 4726.705 kb on + strand, within Xcc-8004.4977.1 at 4726.705 kb on + strand, within Xcc-8004.4977.1 at 4726.705 kb on + strand, within Xcc-8004.4977.1 at 4726.706 kb on - strand, within Xcc-8004.4977.1 at 4726.706 kb on - strand, within Xcc-8004.4977.1 at 4726.753 kb on + strand, within Xcc-8004.4977.1 at 4726.754 kb on - strand, within Xcc-8004.4977.1 at 4726.754 kb on - strand, within Xcc-8004.4977.1 at 4726.754 kb on - strand, within Xcc-8004.4977.1 at 4726.754 kb on - strand, within Xcc-8004.4977.1 at 4726.788 kb on + strand, within Xcc-8004.4977.1 at 4726.789 kb on - strand, within Xcc-8004.4977.1 at 4727.127 kb on + strand, within Xcc-8004.4977.1 at 4727.128 kb on - strand, within Xcc-8004.4977.1 at 4727.219 kb on - strand, within Xcc-8004.4977.1 at 4727.284 kb on + strand, within Xcc-8004.4977.1 at 4727.284 kb on + strand, within Xcc-8004.4977.1 at 4727.285 kb on - strand, within Xcc-8004.4977.1 at 4727.285 kb on - strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.290 kb on + strand, within Xcc-8004.4977.1 at 4727.291 kb on - strand, within Xcc-8004.4977.1 at 4727.291 kb on - strand, within Xcc-8004.4977.1 at 4727.291 kb on - strand, within Xcc-8004.4977.1 at 4727.305 kb on + strand, within Xcc-8004.4977.1 at 4727.305 kb on + strand, within Xcc-8004.4977.1 at 4727.308 kb on + strand, within Xcc-8004.4977.1 at 4727.308 kb on + strand, within Xcc-8004.4977.1 at 4727.308 kb on + strand, within Xcc-8004.4977.1 at 4727.308 kb on + strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.309 kb on - strand, within Xcc-8004.4977.1 at 4727.410 kb on + strand, within Xcc-8004.4977.1 at 4727.410 kb on + strand, within Xcc-8004.4977.1 at 4727.410 kb on + strand, within Xcc-8004.4977.1 at 4727.674 kb on + strand, within Xcc-8004.4977.1 at 4727.674 kb on + strand, within Xcc-8004.4977.1 at 4727.675 kb on - strand, within Xcc-8004.4977.1 at 4727.675 kb on - strand, within Xcc-8004.4977.1 at 4727.675 kb on - strand, within Xcc-8004.4977.1 at 4727.897 kb on + strand at 4727.897 kb on + strand at 4727.898 kb on - strand at 4727.921 kb on - strand at 4728.008 kb on + strand at 4728.008 kb on + strand at 4728.008 kb on + strand at 4728.008 kb on + strand at 4728.008 kb on + strand at 4728.009 kb on - strand at 4728.009 kb on - strand at 4728.009 kb on - strand at 4728.147 kb on + strand, within Xcc-8004.4979.1 at 4728.148 kb on - strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.526 kb on + strand, within Xcc-8004.4979.1 at 4728.526 kb on + strand, within Xcc-8004.4979.1 at 4728.527 kb on - strand, within Xcc-8004.4979.1 at 4728.597 kb on + strand, within Xcc-8004.4979.1 at 4728.624 kb on + strand, within Xcc-8004.4979.1 at 4728.667 kb on + strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.889 kb on - strand at 4728.889 kb on - strand at 4728.997 kb on + strand at 4728.997 kb on + strand at 4728.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,725,245 + -1.1 4,725,245 + -0.8 4,725,253 + -1.2 4,725,253 + +0.7 4,725,254 - -0.6 4,725,254 - +0.2 4,725,254 - -0.9 4,725,321 + -0.0 4,725,321 + -1.0 4,725,321 + -0.1 4,725,322 - +1.8 4,725,377 + +0.7 4,725,378 - -0.7 4,725,378 - -0.2 4,725,378 - -0.8 4,725,378 - +1.8 4,725,378 - -0.5 4,725,428 + -0.3 4,725,429 - +1.1 4,725,449 + -0.9 4,725,449 + +0.3 4,725,449 + +0.1 4,725,450 - -1.3 4,725,466 + +1.6 4,725,466 + +0.2 4,725,466 + +0.9 4,725,466 + +0.3 4,725,466 + +0.4 4,725,466 + -0.6 4,725,467 - -0.2 4,725,467 - -1.6 4,725,467 - -0.6 4,725,496 + -1.0 4,725,496 + -2.0 4,725,496 + -0.6 4,725,496 + -0.3 4,725,496 + +1.8 4,725,496 + +0.3 4,725,497 - -0.1 4,725,497 - +2.4 4,725,497 - +0.9 4,725,497 - -0.3 4,725,616 + -0.1 4,725,616 + +0.4 4,725,679 + +0.2 4,725,679 + +1.2 4,725,679 + -0.5 4,725,679 + +0.6 4,725,680 - +0.6 4,725,680 - +0.2 4,725,680 - -1.1 4,725,680 - -0.1 4,725,680 - +0.2 4,725,773 + -1.1 4,725,928 + -0.7 4,725,929 - -0.6 4,725,958 + -0.7 4,725,958 + -0.7 4,725,958 + +0.7 4,725,959 - +1.5 4,725,959 - +1.3 4,725,974 + +1.6 4,725,975 - +0.6 4,725,975 - +0.5 4,725,975 - -2.6 4,725,992 + -0.1 4,725,992 + +0.4 4,725,992 + -2.3 4,725,992 + +0.6 4,725,992 + +0.1 4,725,993 - +0.8 4,725,993 - -0.2 4,725,993 - -0.8 4,725,993 - +0.2 4,725,993 - -0.1 4,725,993 - +0.7 4,726,011 + +0.4 4,726,011 + -0.5 4,726,011 + -0.0 4,726,012 - -0.4 4,726,012 - -2.4 4,726,012 - -0.1 4,726,012 - +0.3 4,726,012 - -0.8 4,726,012 - +0.3 4,726,083 - +0.7 4,726,201 + -0.8 4,726,201 + +0.7 4,726,202 - +0.9 4,726,202 - +0.4 4,726,303 + -0.2 4,726,304 - -0.1 4,726,304 - +0.7 4,726,304 - +0.9 4,726,304 - +2.5 4,726,375 + -1.0 4,726,376 - -1.4 4,726,376 - -1.2 4,726,390 + Xcc-8004.4977.1 0.11 -0.4 4,726,390 + Xcc-8004.4977.1 0.11 +3.1 4,726,390 + Xcc-8004.4977.1 0.11 +1.2 4,726,390 + Xcc-8004.4977.1 0.11 -1.0 4,726,390 + Xcc-8004.4977.1 0.11 -0.4 4,726,390 + Xcc-8004.4977.1 0.11 -1.0 4,726,390 + Xcc-8004.4977.1 0.11 +0.1 4,726,391 - Xcc-8004.4977.1 0.11 +0.6 4,726,391 - Xcc-8004.4977.1 0.11 +1.0 4,726,391 - Xcc-8004.4977.1 0.11 -0.6 4,726,391 - Xcc-8004.4977.1 0.11 -0.9 4,726,391 - Xcc-8004.4977.1 0.11 -0.8 4,726,391 - Xcc-8004.4977.1 0.11 +0.2 4,726,394 + Xcc-8004.4977.1 0.11 -3.3 4,726,505 - Xcc-8004.4977.1 0.17 +1.5 4,726,540 + Xcc-8004.4977.1 0.19 -0.9 4,726,540 + Xcc-8004.4977.1 0.19 -0.6 4,726,540 + Xcc-8004.4977.1 0.19 -2.5 4,726,541 - Xcc-8004.4977.1 0.19 +0.5 4,726,541 - Xcc-8004.4977.1 0.19 +1.6 4,726,541 - Xcc-8004.4977.1 0.19 +1.6 4,726,541 - Xcc-8004.4977.1 0.19 -0.3 4,726,703 - Xcc-8004.4977.1 0.28 -0.1 4,726,705 + Xcc-8004.4977.1 0.28 +0.5 4,726,705 + Xcc-8004.4977.1 0.28 -1.7 4,726,705 + Xcc-8004.4977.1 0.28 +0.2 4,726,705 + Xcc-8004.4977.1 0.28 +1.3 4,726,705 + Xcc-8004.4977.1 0.28 +0.5 4,726,705 + Xcc-8004.4977.1 0.28 -0.5 4,726,705 + Xcc-8004.4977.1 0.28 +0.8 4,726,705 + Xcc-8004.4977.1 0.28 -1.3 4,726,706 - Xcc-8004.4977.1 0.28 -1.5 4,726,706 - Xcc-8004.4977.1 0.28 -0.6 4,726,753 + Xcc-8004.4977.1 0.31 -1.1 4,726,754 - Xcc-8004.4977.1 0.31 +2.0 4,726,754 - Xcc-8004.4977.1 0.31 +2.5 4,726,754 - Xcc-8004.4977.1 0.31 +0.5 4,726,754 - Xcc-8004.4977.1 0.31 +0.9 4,726,788 + Xcc-8004.4977.1 0.33 -0.1 4,726,789 - Xcc-8004.4977.1 0.33 +1.6 4,727,127 + Xcc-8004.4977.1 0.51 +0.6 4,727,128 - Xcc-8004.4977.1 0.51 +2.5 4,727,219 - Xcc-8004.4977.1 0.56 +0.9 4,727,284 + Xcc-8004.4977.1 0.60 -0.5 4,727,284 + Xcc-8004.4977.1 0.60 -0.5 4,727,285 - Xcc-8004.4977.1 0.60 +2.4 4,727,285 - Xcc-8004.4977.1 0.60 -0.6 4,727,290 + Xcc-8004.4977.1 0.60 -1.4 4,727,290 + Xcc-8004.4977.1 0.60 -1.0 4,727,290 + Xcc-8004.4977.1 0.60 -1.7 4,727,290 + Xcc-8004.4977.1 0.60 +0.2 4,727,290 + Xcc-8004.4977.1 0.60 +0.3 4,727,290 + Xcc-8004.4977.1 0.60 -0.3 4,727,290 + Xcc-8004.4977.1 0.60 +0.1 4,727,290 + Xcc-8004.4977.1 0.60 -0.7 4,727,291 - Xcc-8004.4977.1 0.60 -0.1 4,727,291 - Xcc-8004.4977.1 0.60 +0.0 4,727,291 - Xcc-8004.4977.1 0.60 +0.1 4,727,305 + Xcc-8004.4977.1 0.61 +0.3 4,727,305 + Xcc-8004.4977.1 0.61 +0.4 4,727,308 + Xcc-8004.4977.1 0.61 +1.9 4,727,308 + Xcc-8004.4977.1 0.61 -0.2 4,727,308 + Xcc-8004.4977.1 0.61 +0.2 4,727,308 + Xcc-8004.4977.1 0.61 -0.9 4,727,309 - Xcc-8004.4977.1 0.61 +0.1 4,727,309 - Xcc-8004.4977.1 0.61 -0.9 4,727,309 - Xcc-8004.4977.1 0.61 -0.0 4,727,309 - Xcc-8004.4977.1 0.61 -1.2 4,727,309 - Xcc-8004.4977.1 0.61 +1.0 4,727,309 - Xcc-8004.4977.1 0.61 +0.5 4,727,410 + Xcc-8004.4977.1 0.67 -0.8 4,727,410 + Xcc-8004.4977.1 0.67 -0.6 4,727,410 + Xcc-8004.4977.1 0.67 +0.6 4,727,674 + Xcc-8004.4977.1 0.81 +1.6 4,727,674 + Xcc-8004.4977.1 0.81 +0.7 4,727,675 - Xcc-8004.4977.1 0.82 -1.4 4,727,675 - Xcc-8004.4977.1 0.82 -0.1 4,727,675 - Xcc-8004.4977.1 0.82 -2.9 4,727,897 + +0.3 4,727,897 + +0.2 4,727,898 - -0.1 4,727,921 - -1.1 4,728,008 + +2.0 4,728,008 + +0.6 4,728,008 + -0.6 4,728,008 + +0.2 4,728,008 + +0.5 4,728,009 - +1.2 4,728,009 - -1.2 4,728,009 - -0.9 4,728,147 + Xcc-8004.4979.1 0.14 -2.0 4,728,148 - Xcc-8004.4979.1 0.14 +1.4 4,728,282 + Xcc-8004.4979.1 0.28 -1.0 4,728,282 + Xcc-8004.4979.1 0.28 +0.2 4,728,282 + Xcc-8004.4979.1 0.28 +0.3 4,728,283 - Xcc-8004.4979.1 0.28 -0.7 4,728,283 - Xcc-8004.4979.1 0.28 +0.1 4,728,283 - Xcc-8004.4979.1 0.28 +0.2 4,728,294 + Xcc-8004.4979.1 0.29 +0.2 4,728,294 + Xcc-8004.4979.1 0.29 -0.3 4,728,294 + Xcc-8004.4979.1 0.29 -0.2 4,728,294 + Xcc-8004.4979.1 0.29 +0.2 4,728,294 + Xcc-8004.4979.1 0.29 +1.0 4,728,295 - Xcc-8004.4979.1 0.29 -2.5 4,728,295 - Xcc-8004.4979.1 0.29 -2.0 4,728,295 - Xcc-8004.4979.1 0.29 -2.1 4,728,295 - Xcc-8004.4979.1 0.29 -0.5 4,728,295 - Xcc-8004.4979.1 0.29 +0.4 4,728,295 - Xcc-8004.4979.1 0.29 +0.6 4,728,526 + Xcc-8004.4979.1 0.54 +1.1 4,728,526 + Xcc-8004.4979.1 0.54 -1.1 4,728,527 - Xcc-8004.4979.1 0.54 -1.5 4,728,597 + Xcc-8004.4979.1 0.61 -1.4 4,728,624 + Xcc-8004.4979.1 0.64 +1.7 4,728,667 + Xcc-8004.4979.1 0.69 -0.2 4,728,668 - Xcc-8004.4979.1 0.69 +0.5 4,728,668 - Xcc-8004.4979.1 0.69 -0.3 4,728,668 - Xcc-8004.4979.1 0.69 +3.2 4,728,889 - -0.2 4,728,889 - -2.5 4,728,997 + +0.0 4,728,997 + -0.1 4,728,998 - +0.2
Or see this region's nucleotide sequence