Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4490.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4488.1 and Xcc-8004.4489.1 are separated by 59 nucleotidesXcc-8004.4489.1 and Xcc-8004.4490.1 are separated by 48 nucleotidesXcc-8004.4490.1 and Xcc-8004.4491.1 overlap by 16 nucleotidesXcc-8004.4491.1 and Xcc-8004.4492.1 overlap by 4 nucleotides Xcc-8004.4488.1: Xcc-8004.4488.1 - Electron transfer flavoprotein, alpha subunit, at 4,296,386 to 4,297,330 Xcc-8004.4488.1 Xcc-8004.4489.1: Xcc-8004.4489.1 - hypothetical protein, at 4,297,390 to 4,297,737 Xcc-8004.4489.1 Xcc-8004.4490.1: Xcc-8004.4490.1 - Lipopolysaccharide biosynthesis protein RffA, at 4,297,786 to 4,298,889 Xcc-8004.4490.1 Xcc-8004.4491.1: Xcc-8004.4491.1 - Glycosyltransferase, at 4,298,874 to 4,299,845 Xcc-8004.4491.1 Xcc-8004.4492.1: Xcc-8004.4492.1 - Bifunctional acetyl transferase/isomerase, at 4,299,842 to 4,300,771 Xcc-8004.4492.1 Position (kb) 4297 4298 4299Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4297.352 kb on + strandat 4297.352 kb on + strandat 4297.353 kb on - strandat 4297.353 kb on - strandat 4297.366 kb on - strandat 4297.446 kb on + strand, within Xcc-8004.4489.1at 4297.447 kb on - strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.462 kb on + strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.463 kb on - strand, within Xcc-8004.4489.1at 4297.577 kb on - strand, within Xcc-8004.4489.1at 4297.577 kb on - strand, within Xcc-8004.4489.1at 4297.577 kb on - strand, within Xcc-8004.4489.1at 4297.675 kb on - strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.678 kb on + strand, within Xcc-8004.4489.1at 4297.679 kb on - strand, within Xcc-8004.4489.1at 4297.679 kb on - strand, within Xcc-8004.4489.1at 4297.679 kb on - strand, within Xcc-8004.4489.1at 4297.717 kb on + strandat 4297.718 kb on - strandat 4297.718 kb on - strandat 4297.718 kb on - strandat 4297.735 kb on + strandat 4297.735 kb on + strandat 4297.736 kb on - strandat 4297.736 kb on - strandat 4297.765 kb on + strandat 4297.765 kb on + strandat 4297.766 kb on - strandat 4297.766 kb on - strandat 4297.766 kb on - strandat 4297.882 kb on + strandat 4297.883 kb on - strandat 4297.883 kb on - strandat 4297.883 kb on - strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.885 kb on + strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4297.886 kb on - strandat 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.053 kb on + strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.054 kb on - strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.197 kb on + strand, within Xcc-8004.4490.1at 4298.198 kb on - strand, within Xcc-8004.4490.1at 4298.344 kb on + strand, within Xcc-8004.4490.1at 4298.345 kb on - strand, within Xcc-8004.4490.1at 4298.438 kb on - strand, within Xcc-8004.4490.1at 4298.438 kb on - strand, within Xcc-8004.4490.1at 4298.455 kb on + strand, within Xcc-8004.4490.1at 4298.456 kb on - strand, within Xcc-8004.4490.1at 4298.456 kb on - strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.523 kb on + strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.524 kb on - strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.650 kb on + strand, within Xcc-8004.4490.1at 4298.651 kb on - strand, within Xcc-8004.4490.1at 4298.651 kb on - strand, within Xcc-8004.4490.1at 4298.931 kb on + strandat 4298.931 kb on + strandat 4299.045 kb on + strand, within Xcc-8004.4491.1at 4299.046 kb on - strand, within Xcc-8004.4491.1at 4299.046 kb on - strand, within Xcc-8004.4491.1at 4299.231 kb on + strand, within Xcc-8004.4491.1at 4299.232 kb on - strand, within Xcc-8004.4491.1at 4299.246 kb on + strand, within Xcc-8004.4491.1at 4299.246 kb on + strand, within Xcc-8004.4491.1at 4299.247 kb on - strand, within Xcc-8004.4491.1at 4299.247 kb on - strand, within Xcc-8004.4491.1at 4299.266 kb on - strand, within Xcc-8004.4491.1at 4299.371 kb on + strand, within Xcc-8004.4491.1at 4299.544 kb on - strand, within Xcc-8004.4491.1at 4299.688 kb on - strand, within Xcc-8004.4491.1at 4299.688 kb on - strand, within Xcc-8004.4491.1at 4299.689 kb on + strand, within Xcc-8004.4491.1at 4299.690 kb on - strand, within Xcc-8004.4491.1at 4299.690 kb on - strand, within Xcc-8004.4491.1at 4299.746 kb on + strand, within Xcc-8004.4491.1at 4299.755 kb on + strandat 4299.756 kb on - strandat 4299.756 kb on - strandat 4299.756 kb on - strandat 4299.756 kb on - strandat 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.759 kb on + strandat 4299.760 kb on - strandat 4299.760 kb on - strandat 4299.783 kb on - strandat 4299.800 kb on - strandat 4299.836 kb on + strandat 4299.836 kb on + strandat 4299.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,297,352 + +1.2
4,297,352 + -0.3
4,297,353 - +1.1
4,297,353 - -0.6
4,297,366 - -0.2
4,297,446 + Xcc-8004.4489.1 0.16 -1.1
4,297,447 - Xcc-8004.4489.1 0.16 +1.4
4,297,462 + Xcc-8004.4489.1 0.21 -0.7
4,297,462 + Xcc-8004.4489.1 0.21 -2.2
4,297,462 + Xcc-8004.4489.1 0.21 -1.3
4,297,462 + Xcc-8004.4489.1 0.21 -1.5
4,297,462 + Xcc-8004.4489.1 0.21 -1.0
4,297,462 + Xcc-8004.4489.1 0.21 -3.2
4,297,463 - Xcc-8004.4489.1 0.21 -0.9
4,297,463 - Xcc-8004.4489.1 0.21 -0.3
4,297,463 - Xcc-8004.4489.1 0.21 -2.6
4,297,463 - Xcc-8004.4489.1 0.21 +0.3
4,297,463 - Xcc-8004.4489.1 0.21 -0.6
4,297,463 - Xcc-8004.4489.1 0.21 -1.0
4,297,463 - Xcc-8004.4489.1 0.21 +0.1
4,297,463 - Xcc-8004.4489.1 0.21 +1.5
4,297,463 - Xcc-8004.4489.1 0.21 -0.5
4,297,577 - Xcc-8004.4489.1 0.54 -2.1
4,297,577 - Xcc-8004.4489.1 0.54 -0.2
4,297,577 - Xcc-8004.4489.1 0.54 +0.4
4,297,675 - Xcc-8004.4489.1 0.82 -1.8
4,297,678 + Xcc-8004.4489.1 0.83 -0.9
4,297,678 + Xcc-8004.4489.1 0.83 +2.0
4,297,678 + Xcc-8004.4489.1 0.83 +2.1
4,297,678 + Xcc-8004.4489.1 0.83 -2.5
4,297,678 + Xcc-8004.4489.1 0.83 -0.0
4,297,679 - Xcc-8004.4489.1 0.83 -0.8
4,297,679 - Xcc-8004.4489.1 0.83 -1.4
4,297,679 - Xcc-8004.4489.1 0.83 -0.3
4,297,717 + +1.2
4,297,718 - +0.2
4,297,718 - -0.4
4,297,718 - -0.8
4,297,735 + +0.6
4,297,735 + +0.9
4,297,736 - +1.8
4,297,736 - -0.5
4,297,765 + -0.4
4,297,765 + -0.6
4,297,766 - -1.6
4,297,766 - -0.2
4,297,766 - +0.8
4,297,882 + -1.1
4,297,883 - +0.1
4,297,883 - -2.3
4,297,883 - -1.1
4,297,885 + -0.9
4,297,885 + -1.6
4,297,885 + +0.8
4,297,885 + +1.1
4,297,885 + -1.6
4,297,885 + +0.4
4,297,885 + -0.2
4,297,885 + +0.0
4,297,885 + -1.8
4,297,886 - -0.1
4,297,886 - -2.1
4,297,886 - +1.2
4,297,886 - +1.1
4,297,886 - -0.8
4,297,886 - -0.1
4,297,886 - +0.1
4,297,886 - +1.0
4,298,053 + Xcc-8004.4490.1 0.24 -2.4
4,298,053 + Xcc-8004.4490.1 0.24 -1.1
4,298,053 + Xcc-8004.4490.1 0.24 -1.5
4,298,053 + Xcc-8004.4490.1 0.24 +0.9
4,298,053 + Xcc-8004.4490.1 0.24 +0.3
4,298,053 + Xcc-8004.4490.1 0.24 -1.7
4,298,053 + Xcc-8004.4490.1 0.24 -2.2
4,298,054 - Xcc-8004.4490.1 0.24 -0.8
4,298,054 - Xcc-8004.4490.1 0.24 -1.6
4,298,054 - Xcc-8004.4490.1 0.24 +2.2
4,298,054 - Xcc-8004.4490.1 0.24 +0.3
4,298,054 - Xcc-8004.4490.1 0.24 -1.1
4,298,054 - Xcc-8004.4490.1 0.24 -0.5
4,298,054 - Xcc-8004.4490.1 0.24 +0.8
4,298,054 - Xcc-8004.4490.1 0.24 +1.4
4,298,197 + Xcc-8004.4490.1 0.37 +0.7
4,298,197 + Xcc-8004.4490.1 0.37 -1.4
4,298,197 + Xcc-8004.4490.1 0.37 +0.6
4,298,197 + Xcc-8004.4490.1 0.37 +0.1
4,298,198 - Xcc-8004.4490.1 0.37 -0.7
4,298,344 + Xcc-8004.4490.1 0.51 +0.2
4,298,345 - Xcc-8004.4490.1 0.51 -0.9
4,298,438 - Xcc-8004.4490.1 0.59 +0.2
4,298,438 - Xcc-8004.4490.1 0.59 +0.6
4,298,455 + Xcc-8004.4490.1 0.61 -1.5
4,298,456 - Xcc-8004.4490.1 0.61 +0.4
4,298,456 - Xcc-8004.4490.1 0.61 -0.0
4,298,523 + Xcc-8004.4490.1 0.67 -1.2
4,298,523 + Xcc-8004.4490.1 0.67 +1.9
4,298,523 + Xcc-8004.4490.1 0.67 -0.8
4,298,524 - Xcc-8004.4490.1 0.67 -0.6
4,298,524 - Xcc-8004.4490.1 0.67 -0.2
4,298,524 - Xcc-8004.4490.1 0.67 -2.8
4,298,524 - Xcc-8004.4490.1 0.67 +0.4
4,298,524 - Xcc-8004.4490.1 0.67 +0.3
4,298,524 - Xcc-8004.4490.1 0.67 +1.7
4,298,524 - Xcc-8004.4490.1 0.67 -1.4
4,298,650 + Xcc-8004.4490.1 0.78 -0.8
4,298,650 + Xcc-8004.4490.1 0.78 -1.7
4,298,650 + Xcc-8004.4490.1 0.78 -2.7
4,298,651 - Xcc-8004.4490.1 0.78 -1.7
4,298,651 - Xcc-8004.4490.1 0.78 -1.4
4,298,931 + -1.4
4,298,931 + -1.0
4,299,045 + Xcc-8004.4491.1 0.18 +0.0
4,299,046 - Xcc-8004.4491.1 0.18 -0.6
4,299,046 - Xcc-8004.4491.1 0.18 -0.4
4,299,231 + Xcc-8004.4491.1 0.37 -0.2
4,299,232 - Xcc-8004.4491.1 0.37 -1.4
4,299,246 + Xcc-8004.4491.1 0.38 -1.8
4,299,246 + Xcc-8004.4491.1 0.38 -0.0
4,299,247 - Xcc-8004.4491.1 0.38 +0.7
4,299,247 - Xcc-8004.4491.1 0.38 +0.7
4,299,266 - Xcc-8004.4491.1 0.40 -0.6
4,299,371 + Xcc-8004.4491.1 0.51 -0.8
4,299,544 - Xcc-8004.4491.1 0.69 +0.4
4,299,688 - Xcc-8004.4491.1 0.84 -0.0
4,299,688 - Xcc-8004.4491.1 0.84 -0.1
4,299,689 + Xcc-8004.4491.1 0.84 -1.1
4,299,690 - Xcc-8004.4491.1 0.84 -1.5
4,299,690 - Xcc-8004.4491.1 0.84 -0.5
4,299,746 + Xcc-8004.4491.1 0.90 -0.7
4,299,755 + +2.4
4,299,756 - -0.8
4,299,756 - +0.4
4,299,756 - +0.7
4,299,756 - -1.9
4,299,759 + +1.7
4,299,759 + -1.1
4,299,759 + -0.2
4,299,759 + -0.0
4,299,760 - -0.9
4,299,760 - +1.0
4,299,783 - +0.5
4,299,800 - -0.5
4,299,836 + -1.9
4,299,836 + +0.6
4,299,837 - -0.1

Or see this region's nucleotide sequence