Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4275.1 and Xcc-8004.4276.1 are separated by 45 nucleotides Xcc-8004.4276.1 and Xcc-8004.4277.1 are separated by 72 nucleotides Xcc-8004.4277.1 and Xcc-8004.4278.1 overlap by 4 nucleotides Xcc-8004.4278.1 and Xcc-8004.4279.1 are separated by 54 nucleotides
Xcc-8004.4275.1: Xcc-8004.4275.1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 4,092,241 to 4,093,221
Xcc-8004.4275.1
Xcc-8004.4276.1: Xcc-8004.4276.1 - Dihydrofolate reductase (EC 1.5.1.3), at 4,093,267 to 4,093,761
Xcc-8004.4276.1
Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628
Xcc-8004.4277.1
Xcc-8004.4278.1: Xcc-8004.4278.1 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,094,625 to 4,095,515
Xcc-8004.4278.1
Xcc-8004.4279.1: Xcc-8004.4279.1 - FIG004694: Hypothetical protein, at 4,095,570 to 4,096,061
Xcc-8004.4279.1
Position (kb)
4093
4094
4095 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4093.798 kb on + strand at 4095.509 kb on - strand at 4095.509 kb on - strand at 4095.560 kb on + strand at 4095.560 kb on + strand at 4095.560 kb on + strand at 4095.560 kb on + strand at 4095.560 kb on + strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand at 4095.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,093,798 + +0.5 4,095,509 - +0.4 4,095,509 - -0.1 4,095,560 + +0.6 4,095,560 + +0.0 4,095,560 + -1.6 4,095,560 + +0.5 4,095,560 + +0.1 4,095,561 - -0.1 4,095,561 - -0.3 4,095,561 - +0.9 4,095,561 - +0.7 4,095,561 - -0.4 4,095,561 - -1.7 4,095,561 - +1.8 4,095,561 - +3.3 4,095,561 - -0.5
Or see this region's nucleotide sequence