Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4011.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4009.1 and Xcc-8004.4010.1 overlap by 4 nucleotidesXcc-8004.4010.1 and Xcc-8004.4011.1 are separated by 101 nucleotidesXcc-8004.4011.1 and Xcc-8004.4012.1 are separated by 105 nucleotidesXcc-8004.4012.1 and Xcc-8004.4013.1 are separated by 96 nucleotides Xcc-8004.4009.1: Xcc-8004.4009.1 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 3,883,837 to 3,885,786 Xcc-8004.4009.1 Xcc-8004.4010.1: Xcc-8004.4010.1 - Starvation lipoprotein Slp paralog, at 3,885,783 to 3,886,319 Xcc-8004.4010.1 Xcc-8004.4011.1: Xcc-8004.4011.1 - Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17), at 3,886,421 to 3,886,771 Xcc-8004.4011.1 Xcc-8004.4012.1: Xcc-8004.4012.1 - Recombination protein RecR, at 3,886,877 to 3,887,470 Xcc-8004.4012.1 Xcc-8004.4013.1: Xcc-8004.4013.1 - FIG000557: hypothetical protein co-occurring with RecR, at 3,887,567 to 3,887,887 Xcc-8004.4013.1 Position (kb) 3886 3887Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3885.482 kb on + strand, within Xcc-8004.4009.1at 3885.482 kb on + strand, within Xcc-8004.4009.1at 3885.482 kb on + strand, within Xcc-8004.4009.1at 3885.482 kb on + strand, within Xcc-8004.4009.1at 3885.483 kb on - strand, within Xcc-8004.4009.1at 3885.706 kb on + strandat 3885.788 kb on + strandat 3885.789 kb on - strandat 3885.789 kb on - strandat 3885.789 kb on - strandat 3886.075 kb on - strand, within Xcc-8004.4010.1at 3886.075 kb on - strand, within Xcc-8004.4010.1at 3886.075 kb on - strand, within Xcc-8004.4010.1at 3886.075 kb on - strand, within Xcc-8004.4010.1at 3886.075 kb on - strand, within Xcc-8004.4010.1at 3886.075 kb on - strand, within Xcc-8004.4010.1at 3886.075 kb on - strand, within Xcc-8004.4010.1at 3886.075 kb on - strand, within Xcc-8004.4010.1at 3886.134 kb on + strand, within Xcc-8004.4010.1at 3886.134 kb on + strand, within Xcc-8004.4010.1at 3886.134 kb on + strand, within Xcc-8004.4010.1at 3886.158 kb on + strand, within Xcc-8004.4010.1at 3886.158 kb on + strand, within Xcc-8004.4010.1at 3886.158 kb on + strand, within Xcc-8004.4010.1at 3886.159 kb on - strand, within Xcc-8004.4010.1at 3886.159 kb on - strand, within Xcc-8004.4010.1at 3886.164 kb on + strand, within Xcc-8004.4010.1at 3886.164 kb on + strand, within Xcc-8004.4010.1at 3886.164 kb on + strand, within Xcc-8004.4010.1at 3886.164 kb on + strand, within Xcc-8004.4010.1at 3886.164 kb on + strand, within Xcc-8004.4010.1at 3886.164 kb on + strand, within Xcc-8004.4010.1at 3886.164 kb on + strand, within Xcc-8004.4010.1at 3886.165 kb on - strand, within Xcc-8004.4010.1at 3886.165 kb on - strand, within Xcc-8004.4010.1at 3886.165 kb on - strand, within Xcc-8004.4010.1at 3886.165 kb on - strand, within Xcc-8004.4010.1at 3886.165 kb on - strand, within Xcc-8004.4010.1at 3886.197 kb on + strand, within Xcc-8004.4010.1at 3886.197 kb on + strand, within Xcc-8004.4010.1at 3886.197 kb on + strand, within Xcc-8004.4010.1at 3886.197 kb on + strand, within Xcc-8004.4010.1at 3886.197 kb on + strand, within Xcc-8004.4010.1at 3886.197 kb on + strand, within Xcc-8004.4010.1at 3886.198 kb on - strand, within Xcc-8004.4010.1at 3886.198 kb on - strand, within Xcc-8004.4010.1at 3886.198 kb on - strand, within Xcc-8004.4010.1at 3886.198 kb on - strand, within Xcc-8004.4010.1at 3886.198 kb on - strand, within Xcc-8004.4010.1at 3886.374 kb on + strandat 3886.374 kb on + strandat 3886.374 kb on + strandat 3886.374 kb on + strandat 3886.374 kb on + strandat 3886.374 kb on + strandat 3886.374 kb on + strandat 3886.374 kb on + strandat 3886.375 kb on - strandat 3886.375 kb on - strandat 3886.375 kb on - strandat 3886.375 kb on - strandat 3886.375 kb on - strandat 3886.410 kb on - strandat 3886.410 kb on - strandat 3886.474 kb on + strand, within Xcc-8004.4011.1at 3886.481 kb on + strand, within Xcc-8004.4011.1at 3886.481 kb on + strand, within Xcc-8004.4011.1at 3886.481 kb on + strand, within Xcc-8004.4011.1at 3886.482 kb on - strand, within Xcc-8004.4011.1at 3886.482 kb on - strand, within Xcc-8004.4011.1at 3886.482 kb on - strand, within Xcc-8004.4011.1at 3886.483 kb on - strand, within Xcc-8004.4011.1at 3886.539 kb on - strand, within Xcc-8004.4011.1at 3886.557 kb on + strand, within Xcc-8004.4011.1at 3886.557 kb on + strand, within Xcc-8004.4011.1at 3886.557 kb on + strand, within Xcc-8004.4011.1at 3886.557 kb on + strand, within Xcc-8004.4011.1at 3886.557 kb on + strand, within Xcc-8004.4011.1at 3886.557 kb on + strand, within Xcc-8004.4011.1at 3886.558 kb on - strand, within Xcc-8004.4011.1at 3886.558 kb on - strand, within Xcc-8004.4011.1at 3886.558 kb on - strand, within Xcc-8004.4011.1at 3886.558 kb on - strand, within Xcc-8004.4011.1at 3886.558 kb on - strand, within Xcc-8004.4011.1at 3886.610 kb on + strand, within Xcc-8004.4011.1at 3886.610 kb on + strand, within Xcc-8004.4011.1at 3886.611 kb on - strand, within Xcc-8004.4011.1at 3886.611 kb on - strand, within Xcc-8004.4011.1at 3886.713 kb on + strand, within Xcc-8004.4011.1at 3886.713 kb on + strand, within Xcc-8004.4011.1at 3886.714 kb on - strand, within Xcc-8004.4011.1at 3886.714 kb on - strand, within Xcc-8004.4011.1at 3886.714 kb on - strand, within Xcc-8004.4011.1at 3886.771 kb on + strandat 3886.771 kb on + strandat 3886.772 kb on - strandat 3886.772 kb on - strandat 3886.772 kb on - strandat 3886.772 kb on - strandat 3886.814 kb on + strandat 3886.815 kb on - strandat 3886.862 kb on + strandat 3886.862 kb on + strandat 3886.862 kb on + strandat 3886.862 kb on + strandat 3886.863 kb on - strandat 3886.863 kb on - strandat 3886.863 kb on - strandat 3886.863 kb on - strandat 3886.863 kb on - strandat 3886.863 kb on - strandat 3886.878 kb on + strandat 3886.878 kb on + strandat 3886.878 kb on + strandat 3886.878 kb on + strandat 3886.879 kb on - strandat 3886.879 kb on - strandat 3886.879 kb on - strandat 3886.879 kb on - strandat 3886.891 kb on + strandat 3886.891 kb on + strandat 3886.892 kb on - strandat 3886.892 kb on - strandat 3886.892 kb on - strandat 3886.892 kb on - strandat 3886.932 kb on + strandat 3886.933 kb on - strandat 3887.013 kb on + strand, within Xcc-8004.4012.1at 3887.013 kb on + strand, within Xcc-8004.4012.1at 3887.013 kb on + strand, within Xcc-8004.4012.1at 3887.014 kb on - strand, within Xcc-8004.4012.1at 3887.014 kb on - strand, within Xcc-8004.4012.1at 3887.129 kb on - strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.166 kb on + strand, within Xcc-8004.4012.1at 3887.167 kb on - strand, within Xcc-8004.4012.1at 3887.167 kb on - strand, within Xcc-8004.4012.1at 3887.167 kb on - strand, within Xcc-8004.4012.1at 3887.167 kb on - strand, within Xcc-8004.4012.1at 3887.167 kb on - strand, within Xcc-8004.4012.1at 3887.167 kb on - strand, within Xcc-8004.4012.1at 3887.167 kb on - strand, within Xcc-8004.4012.1at 3887.167 kb on - strand, within Xcc-8004.4012.1at 3887.388 kb on + strand, within Xcc-8004.4012.1at 3887.388 kb on + strand, within Xcc-8004.4012.1at 3887.389 kb on - strand, within Xcc-8004.4012.1at 3887.456 kb on + strandat 3887.456 kb on + strandat 3887.456 kb on + strandat 3887.456 kb on + strandat 3887.457 kb on - strandat 3887.547 kb on + strandat 3887.547 kb on + strandat 3887.548 kb on - strandat 3887.763 kb on - strand, within Xcc-8004.4013.1at 3887.763 kb on - strand, within Xcc-8004.4013.1at 3887.763 kb on - strand, within Xcc-8004.4013.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
3,885,482 + Xcc-8004.4009.1 0.84 -1.7
3,885,482 + Xcc-8004.4009.1 0.84 -1.0
3,885,482 + Xcc-8004.4009.1 0.84 +1.3
3,885,482 + Xcc-8004.4009.1 0.84 -2.9
3,885,483 - Xcc-8004.4009.1 0.84 +0.9
3,885,706 + -1.8
3,885,788 + -0.3
3,885,789 - +0.3
3,885,789 - +0.5
3,885,789 - -0.3
3,886,075 - Xcc-8004.4010.1 0.54 +0.5
3,886,075 - Xcc-8004.4010.1 0.54 +1.0
3,886,075 - Xcc-8004.4010.1 0.54 +0.6
3,886,075 - Xcc-8004.4010.1 0.54 +0.3
3,886,075 - Xcc-8004.4010.1 0.54 +0.0
3,886,075 - Xcc-8004.4010.1 0.54 +1.0
3,886,075 - Xcc-8004.4010.1 0.54 +0.4
3,886,075 - Xcc-8004.4010.1 0.54 +0.4
3,886,134 + Xcc-8004.4010.1 0.65 -0.5
3,886,134 + Xcc-8004.4010.1 0.65 +0.4
3,886,134 + Xcc-8004.4010.1 0.65 +1.1
3,886,158 + Xcc-8004.4010.1 0.70 +0.7
3,886,158 + Xcc-8004.4010.1 0.70 -0.1
3,886,158 + Xcc-8004.4010.1 0.70 +0.4
3,886,159 - Xcc-8004.4010.1 0.70 +1.2
3,886,159 - Xcc-8004.4010.1 0.70 +1.1
3,886,164 + Xcc-8004.4010.1 0.71 +0.2
3,886,164 + Xcc-8004.4010.1 0.71 +0.4
3,886,164 + Xcc-8004.4010.1 0.71 +0.1
3,886,164 + Xcc-8004.4010.1 0.71 +0.4
3,886,164 + Xcc-8004.4010.1 0.71 +1.8
3,886,164 + Xcc-8004.4010.1 0.71 +0.8
3,886,164 + Xcc-8004.4010.1 0.71 +0.6
3,886,165 - Xcc-8004.4010.1 0.71 +2.2
3,886,165 - Xcc-8004.4010.1 0.71 -1.9
3,886,165 - Xcc-8004.4010.1 0.71 +0.0
3,886,165 - Xcc-8004.4010.1 0.71 -0.1
3,886,165 - Xcc-8004.4010.1 0.71 +0.1
3,886,197 + Xcc-8004.4010.1 0.77 +0.4
3,886,197 + Xcc-8004.4010.1 0.77 -2.4
3,886,197 + Xcc-8004.4010.1 0.77 +0.2
3,886,197 + Xcc-8004.4010.1 0.77 +0.2
3,886,197 + Xcc-8004.4010.1 0.77 +0.7
3,886,197 + Xcc-8004.4010.1 0.77 +1.9
3,886,198 - Xcc-8004.4010.1 0.77 +0.3
3,886,198 - Xcc-8004.4010.1 0.77 +0.8
3,886,198 - Xcc-8004.4010.1 0.77 -0.5
3,886,198 - Xcc-8004.4010.1 0.77 +0.8
3,886,198 - Xcc-8004.4010.1 0.77 -0.8
3,886,374 + -0.1
3,886,374 + -0.3
3,886,374 + +0.2
3,886,374 + -2.2
3,886,374 + +1.4
3,886,374 + +0.2
3,886,374 + +0.3
3,886,374 + +0.0
3,886,375 - -0.2
3,886,375 - +0.5
3,886,375 - +0.5
3,886,375 - +0.5
3,886,375 - -0.9
3,886,410 - -0.6
3,886,410 - -0.5
3,886,474 + Xcc-8004.4011.1 0.15 +0.9
3,886,481 + Xcc-8004.4011.1 0.17 -0.9
3,886,481 + Xcc-8004.4011.1 0.17 -0.4
3,886,481 + Xcc-8004.4011.1 0.17 -2.3
3,886,482 - Xcc-8004.4011.1 0.17 +0.3
3,886,482 - Xcc-8004.4011.1 0.17 -3.1
3,886,482 - Xcc-8004.4011.1 0.17 -0.9
3,886,483 - Xcc-8004.4011.1 0.18 +0.5
3,886,539 - Xcc-8004.4011.1 0.34 -0.2
3,886,557 + Xcc-8004.4011.1 0.39 -0.9
3,886,557 + Xcc-8004.4011.1 0.39 +0.6
3,886,557 + Xcc-8004.4011.1 0.39 -0.0
3,886,557 + Xcc-8004.4011.1 0.39 -0.8
3,886,557 + Xcc-8004.4011.1 0.39 +0.2
3,886,557 + Xcc-8004.4011.1 0.39 -0.6
3,886,558 - Xcc-8004.4011.1 0.39 -1.8
3,886,558 - Xcc-8004.4011.1 0.39 -0.5
3,886,558 - Xcc-8004.4011.1 0.39 +1.2
3,886,558 - Xcc-8004.4011.1 0.39 -0.3
3,886,558 - Xcc-8004.4011.1 0.39 +0.3
3,886,610 + Xcc-8004.4011.1 0.54 -0.1
3,886,610 + Xcc-8004.4011.1 0.54 +1.2
3,886,611 - Xcc-8004.4011.1 0.54 +1.5
3,886,611 - Xcc-8004.4011.1 0.54 +1.0
3,886,713 + Xcc-8004.4011.1 0.83 -1.3
3,886,713 + Xcc-8004.4011.1 0.83 -1.1
3,886,714 - Xcc-8004.4011.1 0.83 +0.8
3,886,714 - Xcc-8004.4011.1 0.83 +1.1
3,886,714 - Xcc-8004.4011.1 0.83 -0.3
3,886,771 + +1.3
3,886,771 + -2.1
3,886,772 - -1.8
3,886,772 - +0.3
3,886,772 - +0.3
3,886,772 - -0.4
3,886,814 + +0.6
3,886,815 - +0.1
3,886,862 + +0.4
3,886,862 + +1.0
3,886,862 + -0.2
3,886,862 + -0.1
3,886,863 - -0.1
3,886,863 - +0.3
3,886,863 - -0.2
3,886,863 - -1.2
3,886,863 - -0.8
3,886,863 - +0.5
3,886,878 + +1.1
3,886,878 + -0.7
3,886,878 + +1.1
3,886,878 + +0.1
3,886,879 - -1.1
3,886,879 - -0.4
3,886,879 - +1.4
3,886,879 - -0.0
3,886,891 + +0.2
3,886,891 + +0.6
3,886,892 - +0.5
3,886,892 - +1.0
3,886,892 - -1.0
3,886,892 - +1.2
3,886,932 + +1.5
3,886,933 - -0.5
3,887,013 + Xcc-8004.4012.1 0.23 -0.7
3,887,013 + Xcc-8004.4012.1 0.23 -1.4
3,887,013 + Xcc-8004.4012.1 0.23 -0.1
3,887,014 - Xcc-8004.4012.1 0.23 +0.7
3,887,014 - Xcc-8004.4012.1 0.23 +0.9
3,887,129 - Xcc-8004.4012.1 0.42 +0.1
3,887,166 + Xcc-8004.4012.1 0.49 +0.2
3,887,166 + Xcc-8004.4012.1 0.49 -0.2
3,887,166 + Xcc-8004.4012.1 0.49 +0.3
3,887,166 + Xcc-8004.4012.1 0.49 +0.1
3,887,166 + Xcc-8004.4012.1 0.49 -2.0
3,887,166 + Xcc-8004.4012.1 0.49 -1.8
3,887,166 + Xcc-8004.4012.1 0.49 +0.6
3,887,166 + Xcc-8004.4012.1 0.49 -0.1
3,887,166 + Xcc-8004.4012.1 0.49 -2.2
3,887,166 + Xcc-8004.4012.1 0.49 +0.4
3,887,166 + Xcc-8004.4012.1 0.49 +1.7
3,887,166 + Xcc-8004.4012.1 0.49 +0.3
3,887,166 + Xcc-8004.4012.1 0.49 +0.1
3,887,167 - Xcc-8004.4012.1 0.49 -1.5
3,887,167 - Xcc-8004.4012.1 0.49 +1.2
3,887,167 - Xcc-8004.4012.1 0.49 +0.3
3,887,167 - Xcc-8004.4012.1 0.49 +1.9
3,887,167 - Xcc-8004.4012.1 0.49 -0.9
3,887,167 - Xcc-8004.4012.1 0.49 +0.3
3,887,167 - Xcc-8004.4012.1 0.49 -1.1
3,887,167 - Xcc-8004.4012.1 0.49 +0.7
3,887,388 + Xcc-8004.4012.1 0.86 +0.8
3,887,388 + Xcc-8004.4012.1 0.86 +0.6
3,887,389 - Xcc-8004.4012.1 0.86 -1.4
3,887,456 + +1.1
3,887,456 + +0.1
3,887,456 + +1.0
3,887,456 + -0.5
3,887,457 - -0.1
3,887,547 + -0.2
3,887,547 + -1.4
3,887,548 - -0.6
3,887,763 - Xcc-8004.4013.1 0.61 -0.1
3,887,763 - Xcc-8004.4013.1 0.61 -0.2
3,887,763 - Xcc-8004.4013.1 0.61 -2.9

Or see this region's nucleotide sequence