Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.373.1 and Xcc-8004.374.1 are separated by 38 nucleotides Xcc-8004.374.1 and Xcc-8004.375.1 overlap by 1 nucleotides
Xcc-8004.373.1: Xcc-8004.373.1 - Cardiolipin synthetase (EC 2.7.8.-), at 355,279 to 356,298
Xcc-8004.373.1
Xcc-8004.374.1: Xcc-8004.374.1 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 356,337 to 357,917
Xcc-8004.374.1
Xcc-8004.375.1: Xcc-8004.375.1 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 357,917 to 359,377
Xcc-8004.375.1
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 355.349 kb on - strand at 355.349 kb on - strand at 355.349 kb on - strand at 355.349 kb on - strand at 355.363 kb on + strand at 355.485 kb on - strand, within Xcc-8004.373.1 at 355.611 kb on + strand, within Xcc-8004.373.1 at 355.611 kb on + strand, within Xcc-8004.373.1 at 355.611 kb on + strand, within Xcc-8004.373.1 at 355.611 kb on + strand, within Xcc-8004.373.1 at 355.612 kb on - strand, within Xcc-8004.373.1 at 355.875 kb on + strand, within Xcc-8004.373.1 at 355.922 kb on - strand, within Xcc-8004.373.1 at 355.972 kb on + strand, within Xcc-8004.373.1 at 355.972 kb on + strand, within Xcc-8004.373.1 at 355.973 kb on - strand, within Xcc-8004.373.1 at 356.137 kb on + strand, within Xcc-8004.373.1 at 356.137 kb on + strand, within Xcc-8004.373.1 at 356.256 kb on - strand at 356.297 kb on - strand at 356.297 kb on - strand at 356.438 kb on + strand at 356.438 kb on + strand at 356.438 kb on + strand at 356.438 kb on + strand at 356.438 kb on + strand at 356.439 kb on - strand at 356.439 kb on - strand at 356.440 kb on + strand at 356.440 kb on + strand at 356.608 kb on + strand, within Xcc-8004.374.1 at 356.666 kb on - strand, within Xcc-8004.374.1 at 356.726 kb on + strand, within Xcc-8004.374.1 at 356.726 kb on + strand, within Xcc-8004.374.1 at 356.726 kb on + strand, within Xcc-8004.374.1 at 356.839 kb on + strand, within Xcc-8004.374.1 at 356.839 kb on + strand, within Xcc-8004.374.1 at 356.839 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.181 kb on + strand, within Xcc-8004.374.1 at 357.182 kb on - strand, within Xcc-8004.374.1 at 357.273 kb on + strand, within Xcc-8004.374.1 at 357.273 kb on + strand, within Xcc-8004.374.1 at 357.280 kb on - strand, within Xcc-8004.374.1 at 357.611 kb on + strand, within Xcc-8004.374.1 at 357.611 kb on + strand, within Xcc-8004.374.1 at 357.612 kb on - strand, within Xcc-8004.374.1 at 357.612 kb on - strand, within Xcc-8004.374.1 at 357.659 kb on - strand, within Xcc-8004.374.1 at 357.712 kb on - strand, within Xcc-8004.374.1 at 357.776 kb on - strand at 358.585 kb on - strand, within Xcc-8004.375.1 at 358.585 kb on - strand, within Xcc-8004.375.1 at 358.851 kb on + strand, within Xcc-8004.375.1 at 358.851 kb on + strand, within Xcc-8004.375.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 355,349 - +0.0 355,349 - +0.2 355,349 - -0.0 355,349 - -1.6 355,363 + +1.5 355,485 - Xcc-8004.373.1 0.20 +0.7 355,611 + Xcc-8004.373.1 0.33 -3.2 355,611 + Xcc-8004.373.1 0.33 -0.1 355,611 + Xcc-8004.373.1 0.33 -2.4 355,611 + Xcc-8004.373.1 0.33 -2.8 355,612 - Xcc-8004.373.1 0.33 -0.8 355,875 + Xcc-8004.373.1 0.58 +0.1 355,922 - Xcc-8004.373.1 0.63 +0.9 355,972 + Xcc-8004.373.1 0.68 -0.5 355,972 + Xcc-8004.373.1 0.68 +0.2 355,973 - Xcc-8004.373.1 0.68 +0.2 356,137 + Xcc-8004.373.1 0.84 +0.2 356,137 + Xcc-8004.373.1 0.84 -1.0 356,256 - -0.2 356,297 - +1.2 356,297 - -0.3 356,438 + -0.1 356,438 + -1.4 356,438 + +3.4 356,438 + -0.1 356,438 + -1.0 356,439 - -0.0 356,439 - -0.5 356,440 + -1.4 356,440 + +1.0 356,608 + Xcc-8004.374.1 0.17 -0.5 356,666 - Xcc-8004.374.1 0.21 -0.8 356,726 + Xcc-8004.374.1 0.25 -1.2 356,726 + Xcc-8004.374.1 0.25 -0.5 356,726 + Xcc-8004.374.1 0.25 +1.7 356,839 + Xcc-8004.374.1 0.32 +0.3 356,839 + Xcc-8004.374.1 0.32 -0.1 356,839 + Xcc-8004.374.1 0.32 -0.7 357,181 + Xcc-8004.374.1 0.53 +0.2 357,181 + Xcc-8004.374.1 0.53 +0.4 357,181 + Xcc-8004.374.1 0.53 -2.3 357,181 + Xcc-8004.374.1 0.53 -0.5 357,181 + Xcc-8004.374.1 0.53 +1.9 357,181 + Xcc-8004.374.1 0.53 -0.2 357,182 - Xcc-8004.374.1 0.53 +1.4 357,273 + Xcc-8004.374.1 0.59 -0.3 357,273 + Xcc-8004.374.1 0.59 -0.1 357,280 - Xcc-8004.374.1 0.60 -0.4 357,611 + Xcc-8004.374.1 0.81 +0.4 357,611 + Xcc-8004.374.1 0.81 +0.7 357,612 - Xcc-8004.374.1 0.81 +2.1 357,612 - Xcc-8004.374.1 0.81 +0.2 357,659 - Xcc-8004.374.1 0.84 +2.2 357,712 - Xcc-8004.374.1 0.87 +1.5 357,776 - +1.0 358,585 - Xcc-8004.375.1 0.46 +1.5 358,585 - Xcc-8004.375.1 0.46 -0.5 358,851 + Xcc-8004.375.1 0.64 -0.6 358,851 + Xcc-8004.375.1 0.64 +1.9
Or see this region's nucleotide sequence