Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2874.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2873.1 and Xcc-8004.2874.1 are separated by 614 nucleotidesXcc-8004.2874.1 and Xcc-8004.2875.1 are separated by 137 nucleotidesXcc-8004.2875.1 and Xcc-8004.2877.1 are separated by 35 nucleotides Xcc-8004.2873.1: Xcc-8004.2873.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,791,244 to 2,792,959 Xcc-8004.2873.1 Xcc-8004.2874.1: Xcc-8004.2874.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,793,574 to 2,795,955 Xcc-8004.2874.1 Xcc-8004.2875.1: Xcc-8004.2875.1 - hypothetical protein, at 2,796,093 to 2,796,428 Xcc-8004.2875.1 Xcc-8004.2877.1: Xcc-8004.2877.1 - Methyl-accepting chemotaxis protein, at 2,796,464 to 2,797,768 Xcc-8004.2877.1 Position (kb) 2793 2794 2795 2796Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2792.774 kb on - strand, within Xcc-8004.2873.1at 2792.785 kb on - strand, within Xcc-8004.2873.1at 2793.079 kb on + strandat 2793.079 kb on + strandat 2793.295 kb on + strandat 2793.464 kb on - strandat 2793.464 kb on - strandat 2793.464 kb on - strandat 2793.498 kb on - strandat 2793.718 kb on + strandat 2793.718 kb on + strandat 2793.718 kb on + strandat 2793.718 kb on + strandat 2793.755 kb on + strandat 2793.755 kb on + strandat 2793.756 kb on - strandat 2793.756 kb on - strandat 2793.756 kb on - strandat 2793.797 kb on - strandat 2793.797 kb on - strandat 2793.797 kb on - strandat 2793.797 kb on - strandat 2793.985 kb on + strand, within Xcc-8004.2874.1at 2793.985 kb on + strand, within Xcc-8004.2874.1at 2793.985 kb on + strand, within Xcc-8004.2874.1at 2794.009 kb on + strand, within Xcc-8004.2874.1at 2794.009 kb on + strand, within Xcc-8004.2874.1at 2794.009 kb on + strand, within Xcc-8004.2874.1at 2794.009 kb on + strand, within Xcc-8004.2874.1at 2794.009 kb on + strand, within Xcc-8004.2874.1at 2794.009 kb on + strand, within Xcc-8004.2874.1at 2794.009 kb on + strand, within Xcc-8004.2874.1at 2794.010 kb on - strand, within Xcc-8004.2874.1at 2794.010 kb on - strand, within Xcc-8004.2874.1at 2794.010 kb on - strand, within Xcc-8004.2874.1at 2794.010 kb on - strand, within Xcc-8004.2874.1at 2794.010 kb on - strand, within Xcc-8004.2874.1at 2794.010 kb on - strand, within Xcc-8004.2874.1at 2794.235 kb on - strand, within Xcc-8004.2874.1at 2794.235 kb on - strand, within Xcc-8004.2874.1at 2794.235 kb on - strand, within Xcc-8004.2874.1at 2794.649 kb on + strand, within Xcc-8004.2874.1at 2794.650 kb on - strand, within Xcc-8004.2874.1at 2794.650 kb on - strand, within Xcc-8004.2874.1at 2794.658 kb on - strand, within Xcc-8004.2874.1at 2794.966 kb on + strand, within Xcc-8004.2874.1at 2794.966 kb on + strand, within Xcc-8004.2874.1at 2794.967 kb on - strand, within Xcc-8004.2874.1at 2795.040 kb on + strand, within Xcc-8004.2874.1at 2795.361 kb on + strand, within Xcc-8004.2874.1at 2795.632 kb on + strand, within Xcc-8004.2874.1at 2795.633 kb on - strand, within Xcc-8004.2874.1at 2795.633 kb on - strand, within Xcc-8004.2874.1at 2795.633 kb on - strand, within Xcc-8004.2874.1at 2795.953 kb on + strandat 2795.953 kb on + strandat 2795.953 kb on + strandat 2795.953 kb on + strandat 2795.954 kb on - strandat 2795.954 kb on - strandat 2795.954 kb on - strandat 2796.020 kb on + strandat 2796.021 kb on - strandat 2796.021 kb on - strandat 2796.021 kb on - strandat 2796.029 kb on - strandat 2796.075 kb on + strandat 2796.075 kb on + strandat 2796.076 kb on - strandat 2796.095 kb on - strandat 2796.095 kb on - strandat 2796.195 kb on - strand, within Xcc-8004.2875.1at 2796.257 kb on + strand, within Xcc-8004.2875.1at 2796.257 kb on + strand, within Xcc-8004.2875.1at 2796.257 kb on + strand, within Xcc-8004.2875.1at 2796.257 kb on + strand, within Xcc-8004.2875.1at 2796.258 kb on - strand, within Xcc-8004.2875.1at 2796.258 kb on - strand, within Xcc-8004.2875.1at 2796.258 kb on - strand, within Xcc-8004.2875.1at 2796.258 kb on - strand, within Xcc-8004.2875.1at 2796.258 kb on - strand, within Xcc-8004.2875.1at 2796.258 kb on - strand, within Xcc-8004.2875.1at 2796.301 kb on + strand, within Xcc-8004.2875.1at 2796.301 kb on + strand, within Xcc-8004.2875.1at 2796.301 kb on + strand, within Xcc-8004.2875.1at 2796.301 kb on + strand, within Xcc-8004.2875.1at 2796.301 kb on + strand, within Xcc-8004.2875.1at 2796.301 kb on + strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.302 kb on - strand, within Xcc-8004.2875.1at 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.463 kb on + strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.464 kb on - strandat 2796.511 kb on - strandat 2796.560 kb on + strandat 2796.560 kb on + strandat 2796.560 kb on + strandat 2796.561 kb on - strandat 2796.561 kb on - strandat 2796.561 kb on - strandat 2796.561 kb on - strandat 2796.561 kb on - strandat 2796.616 kb on + strand, within Xcc-8004.2877.1at 2796.647 kb on + strand, within Xcc-8004.2877.1at 2796.647 kb on + strand, within Xcc-8004.2877.1at 2796.648 kb on - strand, within Xcc-8004.2877.1at 2796.648 kb on - strand, within Xcc-8004.2877.1at 2796.648 kb on - strand, within Xcc-8004.2877.1at 2796.648 kb on - strand, within Xcc-8004.2877.1at 2796.648 kb on - strand, within Xcc-8004.2877.1at 2796.648 kb on - strand, within Xcc-8004.2877.1at 2796.648 kb on - strand, within Xcc-8004.2877.1at 2796.648 kb on - strand, within Xcc-8004.2877.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,792,774 - Xcc-8004.2873.1 0.89 +0.1
2,792,785 - Xcc-8004.2873.1 0.90 +0.9
2,793,079 + +0.4
2,793,079 + -0.4
2,793,295 + +0.6
2,793,464 - +0.5
2,793,464 - +1.0
2,793,464 - +0.4
2,793,498 - +2.0
2,793,718 + -2.5
2,793,718 + -0.7
2,793,718 + -1.3
2,793,718 + +0.3
2,793,755 + +0.1
2,793,755 + +0.7
2,793,756 - -0.1
2,793,756 - +0.6
2,793,756 - -0.2
2,793,797 - -1.1
2,793,797 - +3.3
2,793,797 - -0.6
2,793,797 - -2.6
2,793,985 + Xcc-8004.2874.1 0.17 -0.4
2,793,985 + Xcc-8004.2874.1 0.17 +0.6
2,793,985 + Xcc-8004.2874.1 0.17 +0.5
2,794,009 + Xcc-8004.2874.1 0.18 -1.6
2,794,009 + Xcc-8004.2874.1 0.18 -0.1
2,794,009 + Xcc-8004.2874.1 0.18 -1.9
2,794,009 + Xcc-8004.2874.1 0.18 +0.6
2,794,009 + Xcc-8004.2874.1 0.18 +0.7
2,794,009 + Xcc-8004.2874.1 0.18 +0.1
2,794,009 + Xcc-8004.2874.1 0.18 -2.7
2,794,010 - Xcc-8004.2874.1 0.18 +1.6
2,794,010 - Xcc-8004.2874.1 0.18 -2.1
2,794,010 - Xcc-8004.2874.1 0.18 -1.9
2,794,010 - Xcc-8004.2874.1 0.18 -0.4
2,794,010 - Xcc-8004.2874.1 0.18 +0.9
2,794,010 - Xcc-8004.2874.1 0.18 +0.2
2,794,235 - Xcc-8004.2874.1 0.28 -2.0
2,794,235 - Xcc-8004.2874.1 0.28 -0.4
2,794,235 - Xcc-8004.2874.1 0.28 -1.5
2,794,649 + Xcc-8004.2874.1 0.45 -0.4
2,794,650 - Xcc-8004.2874.1 0.45 -1.6
2,794,650 - Xcc-8004.2874.1 0.45 -0.7
2,794,658 - Xcc-8004.2874.1 0.46 -0.7
2,794,966 + Xcc-8004.2874.1 0.58 -0.8
2,794,966 + Xcc-8004.2874.1 0.58 -1.1
2,794,967 - Xcc-8004.2874.1 0.58 -0.1
2,795,040 + Xcc-8004.2874.1 0.62 -1.5
2,795,361 + Xcc-8004.2874.1 0.75 -0.0
2,795,632 + Xcc-8004.2874.1 0.86 -0.4
2,795,633 - Xcc-8004.2874.1 0.86 -2.0
2,795,633 - Xcc-8004.2874.1 0.86 -0.7
2,795,633 - Xcc-8004.2874.1 0.86 +0.6
2,795,953 + +0.4
2,795,953 + -0.8
2,795,953 + -1.5
2,795,953 + -1.1
2,795,954 - -1.0
2,795,954 - -0.6
2,795,954 - +1.8
2,796,020 + -1.7
2,796,021 - -1.8
2,796,021 - +0.2
2,796,021 - -0.0
2,796,029 - -0.8
2,796,075 + +0.2
2,796,075 + -0.1
2,796,076 - -1.9
2,796,095 - -1.4
2,796,095 - -0.1
2,796,195 - Xcc-8004.2875.1 0.30 +1.0
2,796,257 + Xcc-8004.2875.1 0.49 +2.3
2,796,257 + Xcc-8004.2875.1 0.49 +0.4
2,796,257 + Xcc-8004.2875.1 0.49 -0.3
2,796,257 + Xcc-8004.2875.1 0.49 +0.9
2,796,258 - Xcc-8004.2875.1 0.49 +0.2
2,796,258 - Xcc-8004.2875.1 0.49 -0.0
2,796,258 - Xcc-8004.2875.1 0.49 -1.2
2,796,258 - Xcc-8004.2875.1 0.49 +0.8
2,796,258 - Xcc-8004.2875.1 0.49 -0.3
2,796,258 - Xcc-8004.2875.1 0.49 -0.7
2,796,301 + Xcc-8004.2875.1 0.62 +0.8
2,796,301 + Xcc-8004.2875.1 0.62 -1.0
2,796,301 + Xcc-8004.2875.1 0.62 +1.0
2,796,301 + Xcc-8004.2875.1 0.62 +2.2
2,796,301 + Xcc-8004.2875.1 0.62 -0.5
2,796,301 + Xcc-8004.2875.1 0.62 +0.9
2,796,302 - Xcc-8004.2875.1 0.62 +0.9
2,796,302 - Xcc-8004.2875.1 0.62 -0.3
2,796,302 - Xcc-8004.2875.1 0.62 -0.5
2,796,302 - Xcc-8004.2875.1 0.62 +1.5
2,796,302 - Xcc-8004.2875.1 0.62 +0.0
2,796,302 - Xcc-8004.2875.1 0.62 +0.3
2,796,302 - Xcc-8004.2875.1 0.62 -0.8
2,796,302 - Xcc-8004.2875.1 0.62 -0.8
2,796,302 - Xcc-8004.2875.1 0.62 -0.2
2,796,302 - Xcc-8004.2875.1 0.62 +0.7
2,796,302 - Xcc-8004.2875.1 0.62 +0.6
2,796,302 - Xcc-8004.2875.1 0.62 -1.4
2,796,302 - Xcc-8004.2875.1 0.62 +0.4
2,796,302 - Xcc-8004.2875.1 0.62 -0.4
2,796,463 + -1.0
2,796,463 + -0.4
2,796,463 + -0.5
2,796,463 + +0.3
2,796,463 + +0.9
2,796,463 + -1.5
2,796,463 + +1.3
2,796,463 + -0.1
2,796,463 + -0.8
2,796,463 + -0.6
2,796,463 + +2.2
2,796,464 - -0.2
2,796,464 - -0.5
2,796,464 - +0.6
2,796,464 - +0.1
2,796,464 - +0.3
2,796,464 - -1.8
2,796,464 - +0.9
2,796,464 - -0.2
2,796,464 - -1.2
2,796,464 - +0.3
2,796,464 - +0.4
2,796,464 - +0.3
2,796,464 - +0.4
2,796,464 - +1.2
2,796,511 - -1.3
2,796,560 + -0.9
2,796,560 + +0.3
2,796,560 + -1.1
2,796,561 - +0.1
2,796,561 - +0.1
2,796,561 - -1.4
2,796,561 - -1.2
2,796,561 - -1.8
2,796,616 + Xcc-8004.2877.1 0.12 -0.7
2,796,647 + Xcc-8004.2877.1 0.14 +1.6
2,796,647 + Xcc-8004.2877.1 0.14 +0.2
2,796,648 - Xcc-8004.2877.1 0.14 -1.7
2,796,648 - Xcc-8004.2877.1 0.14 +0.6
2,796,648 - Xcc-8004.2877.1 0.14 +0.6
2,796,648 - Xcc-8004.2877.1 0.14 +0.5
2,796,648 - Xcc-8004.2877.1 0.14 -1.1
2,796,648 - Xcc-8004.2877.1 0.14 +0.1
2,796,648 - Xcc-8004.2877.1 0.14 -0.8
2,796,648 - Xcc-8004.2877.1 0.14 -0.2

Or see this region's nucleotide sequence