Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.222.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.220.1 and Xcc-8004.222.1 are separated by 338 nucleotidesXcc-8004.222.1 and Xcc-8004.223.1 are separated by 80 nucleotides Xcc-8004.220.1: Xcc-8004.220.1 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation, at 216,439 to 217,911 Xcc-8004.220.1 Xcc-8004.222.1: Xcc-8004.222.1 - Cysteine desulfurase (EC 2.8.1.7), at 218,250 to 218,906 Xcc-8004.222.1 Xcc-8004.223.1: Xcc-8004.223.1 - FIG01211456: hypothetical protein, at 218,987 to 220,276 Xcc-8004.223.1 Position (kb) 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 217.532 kb on - strand, within Xcc-8004.220.1at 217.554 kb on + strand, within Xcc-8004.220.1at 217.555 kb on - strand, within Xcc-8004.220.1at 217.889 kb on + strandat 217.925 kb on + strandat 217.926 kb on - strandat 217.926 kb on - strandat 217.984 kb on + strandat 217.984 kb on + strandat 218.085 kb on + strandat 218.148 kb on + strandat 218.148 kb on + strandat 218.148 kb on + strandat 218.149 kb on - strandat 218.149 kb on - strandat 218.149 kb on - strandat 218.149 kb on - strandat 218.219 kb on + strandat 218.219 kb on + strandat 218.219 kb on + strandat 218.220 kb on - strandat 218.220 kb on - strandat 218.220 kb on - strandat 218.304 kb on - strandat 218.407 kb on + strand, within Xcc-8004.222.1at 218.407 kb on + strand, within Xcc-8004.222.1at 218.407 kb on + strand, within Xcc-8004.222.1at 218.828 kb on + strand, within Xcc-8004.222.1at 218.828 kb on + strand, within Xcc-8004.222.1at 218.828 kb on + strand, within Xcc-8004.222.1at 218.829 kb on - strand, within Xcc-8004.222.1at 218.829 kb on - strand, within Xcc-8004.222.1at 218.829 kb on - strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.830 kb on + strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.831 kb on - strand, within Xcc-8004.222.1at 218.932 kb on + strandat 218.932 kb on + strandat 218.932 kb on + strandat 218.933 kb on - strandat 218.986 kb on + strandat 218.986 kb on + strandat 218.986 kb on + strandat 218.987 kb on - strandat 218.987 kb on - strandat 218.987 kb on - strandat 218.987 kb on - strandat 219.075 kb on + strandat 219.076 kb on - strandat 219.212 kb on + strand, within Xcc-8004.223.1at 219.212 kb on + strand, within Xcc-8004.223.1at 219.213 kb on - strand, within Xcc-8004.223.1at 219.213 kb on - strand, within Xcc-8004.223.1at 219.213 kb on - strand, within Xcc-8004.223.1at 219.213 kb on - strand, within Xcc-8004.223.1at 219.213 kb on - strand, within Xcc-8004.223.1at 219.254 kb on + strand, within Xcc-8004.223.1at 219.254 kb on + strand, within Xcc-8004.223.1at 219.254 kb on + strand, within Xcc-8004.223.1at 219.254 kb on + strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.255 kb on - strand, within Xcc-8004.223.1at 219.257 kb on + strand, within Xcc-8004.223.1at 219.257 kb on + strand, within Xcc-8004.223.1at 219.257 kb on + strand, within Xcc-8004.223.1at 219.258 kb on - strand, within Xcc-8004.223.1at 219.258 kb on - strand, within Xcc-8004.223.1at 219.335 kb on + strand, within Xcc-8004.223.1at 219.336 kb on - strand, within Xcc-8004.223.1at 219.538 kb on + strand, within Xcc-8004.223.1at 219.538 kb on + strand, within Xcc-8004.223.1at 219.539 kb on - strand, within Xcc-8004.223.1at 219.688 kb on + strand, within Xcc-8004.223.1at 219.748 kb on + strand, within Xcc-8004.223.1at 219.749 kb on - strand, within Xcc-8004.223.1at 219.797 kb on + strand, within Xcc-8004.223.1at 219.797 kb on + strand, within Xcc-8004.223.1at 219.798 kb on - strand, within Xcc-8004.223.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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217,532 - Xcc-8004.220.1 0.74 -0.6
217,554 + Xcc-8004.220.1 0.76 +0.1
217,555 - Xcc-8004.220.1 0.76 +0.7
217,889 + -1.8
217,925 + +0.3
217,926 - +0.2
217,926 - +1.4
217,984 + +0.0
217,984 + +0.6
218,085 + +0.5
218,148 + -1.0
218,148 + -1.2
218,148 + -1.2
218,149 - +0.2
218,149 - +0.1
218,149 - +0.4
218,149 - -0.7
218,219 + +0.5
218,219 + -0.5
218,219 + +0.5
218,220 - -0.1
218,220 - +1.0
218,220 - -0.1
218,304 - -1.8
218,407 + Xcc-8004.222.1 0.24 +1.9
218,407 + Xcc-8004.222.1 0.24 +1.4
218,407 + Xcc-8004.222.1 0.24 -1.0
218,828 + Xcc-8004.222.1 0.88 -2.1
218,828 + Xcc-8004.222.1 0.88 +1.2
218,828 + Xcc-8004.222.1 0.88 +1.3
218,829 - Xcc-8004.222.1 0.88 +1.2
218,829 - Xcc-8004.222.1 0.88 -1.3
218,829 - Xcc-8004.222.1 0.88 -0.3
218,830 + Xcc-8004.222.1 0.88 -0.3
218,830 + Xcc-8004.222.1 0.88 +0.7
218,830 + Xcc-8004.222.1 0.88 -3.6
218,830 + Xcc-8004.222.1 0.88 +0.9
218,830 + Xcc-8004.222.1 0.88 +1.0
218,830 + Xcc-8004.222.1 0.88 +0.0
218,830 + Xcc-8004.222.1 0.88 -0.5
218,830 + Xcc-8004.222.1 0.88 -0.5
218,830 + Xcc-8004.222.1 0.88 +1.5
218,830 + Xcc-8004.222.1 0.88 -0.4
218,830 + Xcc-8004.222.1 0.88 +0.3
218,830 + Xcc-8004.222.1 0.88 +0.3
218,830 + Xcc-8004.222.1 0.88 +1.4
218,830 + Xcc-8004.222.1 0.88 +0.9
218,830 + Xcc-8004.222.1 0.88 -1.2
218,830 + Xcc-8004.222.1 0.88 -1.8
218,830 + Xcc-8004.222.1 0.88 +0.1
218,830 + Xcc-8004.222.1 0.88 +0.1
218,830 + Xcc-8004.222.1 0.88 +1.2
218,830 + Xcc-8004.222.1 0.88 +0.1
218,831 - Xcc-8004.222.1 0.88 +0.7
218,831 - Xcc-8004.222.1 0.88 -0.3
218,831 - Xcc-8004.222.1 0.88 +0.8
218,831 - Xcc-8004.222.1 0.88 -2.8
218,831 - Xcc-8004.222.1 0.88 -1.6
218,831 - Xcc-8004.222.1 0.88 +0.1
218,831 - Xcc-8004.222.1 0.88 -2.4
218,831 - Xcc-8004.222.1 0.88 +0.7
218,831 - Xcc-8004.222.1 0.88 -0.3
218,831 - Xcc-8004.222.1 0.88 +0.3
218,831 - Xcc-8004.222.1 0.88 +1.2
218,831 - Xcc-8004.222.1 0.88 -0.5
218,831 - Xcc-8004.222.1 0.88 +0.1
218,831 - Xcc-8004.222.1 0.88 -0.5
218,831 - Xcc-8004.222.1 0.88 -0.3
218,932 + -2.9
218,932 + -0.1
218,932 + -1.6
218,933 - -1.4
218,986 + +0.8
218,986 + -0.2
218,986 + -0.0
218,987 - -1.1
218,987 - +1.1
218,987 - +0.5
218,987 - +0.8
219,075 + -0.6
219,076 - +0.1
219,212 + Xcc-8004.223.1 0.17 +0.6
219,212 + Xcc-8004.223.1 0.17 +0.5
219,213 - Xcc-8004.223.1 0.18 -1.1
219,213 - Xcc-8004.223.1 0.18 -1.3
219,213 - Xcc-8004.223.1 0.18 +1.0
219,213 - Xcc-8004.223.1 0.18 +0.4
219,213 - Xcc-8004.223.1 0.18 -0.4
219,254 + Xcc-8004.223.1 0.21 -0.4
219,254 + Xcc-8004.223.1 0.21 +1.1
219,254 + Xcc-8004.223.1 0.21 -0.0
219,254 + Xcc-8004.223.1 0.21 -0.3
219,255 - Xcc-8004.223.1 0.21 +0.5
219,255 - Xcc-8004.223.1 0.21 -1.6
219,255 - Xcc-8004.223.1 0.21 +0.6
219,255 - Xcc-8004.223.1 0.21 +1.5
219,255 - Xcc-8004.223.1 0.21 -2.3
219,255 - Xcc-8004.223.1 0.21 -0.8
219,255 - Xcc-8004.223.1 0.21 +1.4
219,255 - Xcc-8004.223.1 0.21 -1.0
219,255 - Xcc-8004.223.1 0.21 +1.1
219,255 - Xcc-8004.223.1 0.21 +0.8
219,255 - Xcc-8004.223.1 0.21 -1.1
219,257 + Xcc-8004.223.1 0.21 -1.4
219,257 + Xcc-8004.223.1 0.21 +0.4
219,257 + Xcc-8004.223.1 0.21 +1.1
219,258 - Xcc-8004.223.1 0.21 +2.4
219,258 - Xcc-8004.223.1 0.21 -1.0
219,335 + Xcc-8004.223.1 0.27 -1.4
219,336 - Xcc-8004.223.1 0.27 +2.2
219,538 + Xcc-8004.223.1 0.43 +0.0
219,538 + Xcc-8004.223.1 0.43 -0.9
219,539 - Xcc-8004.223.1 0.43 +0.7
219,688 + Xcc-8004.223.1 0.54 +0.7
219,748 + Xcc-8004.223.1 0.59 -0.2
219,749 - Xcc-8004.223.1 0.59 +0.6
219,797 + Xcc-8004.223.1 0.63 +2.9
219,797 + Xcc-8004.223.1 0.63 -2.7
219,798 - Xcc-8004.223.1 0.63 +1.1

Or see this region's nucleotide sequence