Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1872.1 and Xcc-8004.1873.1 overlap by 4 nucleotides Xcc-8004.1873.1 and Xcc-8004.1874.1 are separated by 56 nucleotides Xcc-8004.1874.1 and Xcc-8004.1875.1 are separated by 72 nucleotides
Xcc-8004.1872.1: Xcc-8004.1872.1 - DNA polymerase III delta subunit (EC 2.7.7.7), at 1,805,131 to 1,806,159
Xcc-8004.1872.1
Xcc-8004.1873.1: Xcc-8004.1873.1 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 1,806,156 to 1,807,055
Xcc-8004.1873.1
Xcc-8004.1874.1: Xcc-8004.1874.1 - Iojap protein, at 1,807,112 to 1,807,531
Xcc-8004.1874.1
Xcc-8004.1875.1: Xcc-8004.1875.1 - FIG01210189: hypothetical protein, at 1,807,604 to 1,809,139
Xcc-8004.1875.1
Position (kb) 1807
1808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1806.354 kb on - strand, within Xcc-8004.1873.1 at 1806.402 kb on + strand, within Xcc-8004.1873.1 at 1806.402 kb on + strand, within Xcc-8004.1873.1 at 1806.403 kb on - strand, within Xcc-8004.1873.1 at 1806.403 kb on - strand, within Xcc-8004.1873.1 at 1806.403 kb on - strand, within Xcc-8004.1873.1 at 1806.643 kb on - strand, within Xcc-8004.1873.1 at 1807.029 kb on + strand at 1807.030 kb on - strand at 1807.030 kb on - strand at 1807.030 kb on - strand at 1807.030 kb on - strand at 1807.079 kb on + strand at 1807.079 kb on + strand at 1807.079 kb on + strand at 1807.079 kb on + strand at 1807.079 kb on + strand at 1807.080 kb on - strand at 1807.080 kb on - strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.081 kb on + strand at 1807.082 kb on - strand at 1807.082 kb on - strand at 1807.082 kb on - strand at 1807.082 kb on - strand at 1807.082 kb on - strand at 1807.082 kb on - strand at 1807.082 kb on - strand at 1807.096 kb on + strand at 1807.096 kb on + strand at 1807.097 kb on - strand at 1807.265 kb on + strand, within Xcc-8004.1874.1 at 1807.265 kb on + strand, within Xcc-8004.1874.1 at 1807.265 kb on + strand, within Xcc-8004.1874.1 at 1807.265 kb on + strand, within Xcc-8004.1874.1 at 1807.265 kb on + strand, within Xcc-8004.1874.1 at 1807.265 kb on + strand, within Xcc-8004.1874.1 at 1807.265 kb on + strand, within Xcc-8004.1874.1 at 1807.265 kb on + strand, within Xcc-8004.1874.1 at 1807.266 kb on - strand, within Xcc-8004.1874.1 at 1807.451 kb on + strand, within Xcc-8004.1874.1 at 1807.451 kb on + strand, within Xcc-8004.1874.1 at 1807.451 kb on + strand, within Xcc-8004.1874.1 at 1807.451 kb on + strand, within Xcc-8004.1874.1 at 1807.451 kb on + strand, within Xcc-8004.1874.1 at 1807.451 kb on + strand, within Xcc-8004.1874.1 at 1807.451 kb on + strand, within Xcc-8004.1874.1 at 1807.451 kb on + strand, within Xcc-8004.1874.1 at 1807.452 kb on - strand, within Xcc-8004.1874.1 at 1807.452 kb on - strand, within Xcc-8004.1874.1 at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.529 kb on + strand at 1807.530 kb on - strand at 1807.530 kb on - strand at 1807.530 kb on - strand at 1807.530 kb on - strand at 1807.530 kb on - strand at 1807.605 kb on + strand at 1807.605 kb on + strand at 1807.605 kb on + strand at 1807.606 kb on - strand at 1807.606 kb on - strand at 1807.606 kb on - strand at 1807.606 kb on - strand at 1807.606 kb on - strand at 1807.606 kb on - strand at 1807.606 kb on - strand at 1807.606 kb on - strand at 1807.796 kb on + strand, within Xcc-8004.1875.1 at 1807.796 kb on + strand, within Xcc-8004.1875.1 at 1807.796 kb on + strand, within Xcc-8004.1875.1 at 1807.796 kb on + strand, within Xcc-8004.1875.1 at 1807.797 kb on - strand, within Xcc-8004.1875.1 at 1807.797 kb on - strand, within Xcc-8004.1875.1 at 1807.797 kb on - strand, within Xcc-8004.1875.1 at 1807.797 kb on - strand, within Xcc-8004.1875.1 at 1807.797 kb on - strand, within Xcc-8004.1875.1 at 1807.800 kb on + strand, within Xcc-8004.1875.1 at 1807.800 kb on + strand, within Xcc-8004.1875.1 at 1807.800 kb on + strand, within Xcc-8004.1875.1 at 1807.800 kb on + strand, within Xcc-8004.1875.1 at 1807.800 kb on + strand, within Xcc-8004.1875.1 at 1807.800 kb on + strand, within Xcc-8004.1875.1 at 1807.800 kb on + strand, within Xcc-8004.1875.1 at 1807.800 kb on + strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.801 kb on - strand, within Xcc-8004.1875.1 at 1807.852 kb on - strand, within Xcc-8004.1875.1 at 1807.978 kb on + strand, within Xcc-8004.1875.1 at 1807.979 kb on - strand, within Xcc-8004.1875.1 at 1808.073 kb on + strand, within Xcc-8004.1875.1 at 1808.073 kb on + strand, within Xcc-8004.1875.1 at 1808.073 kb on + strand, within Xcc-8004.1875.1 at 1808.074 kb on - strand, within Xcc-8004.1875.1 at 1808.074 kb on - strand, within Xcc-8004.1875.1 at 1808.074 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.080 kb on - strand, within Xcc-8004.1875.1 at 1808.364 kb on + strand, within Xcc-8004.1875.1 at 1808.365 kb on - strand, within Xcc-8004.1875.1 at 1808.400 kb on + strand, within Xcc-8004.1875.1 at 1808.400 kb on + strand, within Xcc-8004.1875.1 at 1808.400 kb on + strand, within Xcc-8004.1875.1 at 1808.400 kb on + strand, within Xcc-8004.1875.1 at 1808.400 kb on + strand, within Xcc-8004.1875.1 at 1808.401 kb on - strand, within Xcc-8004.1875.1 at 1808.401 kb on - strand, within Xcc-8004.1875.1 at 1808.401 kb on - strand, within Xcc-8004.1875.1 at 1808.401 kb on - strand, within Xcc-8004.1875.1 at 1808.511 kb on + strand, within Xcc-8004.1875.1 at 1808.511 kb on + strand, within Xcc-8004.1875.1 at 1808.511 kb on + strand, within Xcc-8004.1875.1 at 1808.512 kb on - strand, within Xcc-8004.1875.1 at 1808.512 kb on - strand, within Xcc-8004.1875.1 at 1808.512 kb on - strand, within Xcc-8004.1875.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,806,354 - Xcc-8004.1873.1 0.22 -1.6 1,806,402 + Xcc-8004.1873.1 0.27 +0.8 1,806,402 + Xcc-8004.1873.1 0.27 -1.3 1,806,403 - Xcc-8004.1873.1 0.27 -2.8 1,806,403 - Xcc-8004.1873.1 0.27 -2.8 1,806,403 - Xcc-8004.1873.1 0.27 +1.0 1,806,643 - Xcc-8004.1873.1 0.54 -0.6 1,807,029 + -2.4 1,807,030 - -1.0 1,807,030 - -1.4 1,807,030 - -0.6 1,807,030 - -1.2 1,807,079 + -1.8 1,807,079 + -0.1 1,807,079 + +0.9 1,807,079 + +0.6 1,807,079 + +0.6 1,807,080 - -0.1 1,807,080 - +0.2 1,807,081 + -0.5 1,807,081 + -0.1 1,807,081 + -1.0 1,807,081 + -0.5 1,807,081 + -0.0 1,807,081 + -1.5 1,807,081 + +0.8 1,807,081 + +0.9 1,807,081 + +1.9 1,807,081 + -1.6 1,807,081 + +1.0 1,807,082 - -0.6 1,807,082 - -1.0 1,807,082 - -1.6 1,807,082 - +0.3 1,807,082 - +2.2 1,807,082 - +0.5 1,807,082 - +0.1 1,807,096 + +1.6 1,807,096 + -1.5 1,807,097 - -0.0 1,807,265 + Xcc-8004.1874.1 0.36 -1.2 1,807,265 + Xcc-8004.1874.1 0.36 +1.0 1,807,265 + Xcc-8004.1874.1 0.36 +0.6 1,807,265 + Xcc-8004.1874.1 0.36 +0.7 1,807,265 + Xcc-8004.1874.1 0.36 -0.6 1,807,265 + Xcc-8004.1874.1 0.36 -0.5 1,807,265 + Xcc-8004.1874.1 0.36 -0.2 1,807,265 + Xcc-8004.1874.1 0.36 -0.4 1,807,266 - Xcc-8004.1874.1 0.37 +0.1 1,807,451 + Xcc-8004.1874.1 0.81 -0.3 1,807,451 + Xcc-8004.1874.1 0.81 +2.8 1,807,451 + Xcc-8004.1874.1 0.81 -1.0 1,807,451 + Xcc-8004.1874.1 0.81 +0.4 1,807,451 + Xcc-8004.1874.1 0.81 +0.5 1,807,451 + Xcc-8004.1874.1 0.81 -1.5 1,807,451 + Xcc-8004.1874.1 0.81 +1.3 1,807,451 + Xcc-8004.1874.1 0.81 -2.1 1,807,452 - Xcc-8004.1874.1 0.81 +1.5 1,807,452 - Xcc-8004.1874.1 0.81 -0.5 1,807,529 + +1.3 1,807,529 + +0.7 1,807,529 + -1.0 1,807,529 + -0.1 1,807,529 + -0.8 1,807,529 + -0.1 1,807,529 + +0.5 1,807,529 + +1.4 1,807,529 + -0.1 1,807,529 + +0.9 1,807,530 - -0.2 1,807,530 - -1.0 1,807,530 - +0.1 1,807,530 - -1.6 1,807,530 - -0.8 1,807,605 + -0.2 1,807,605 + -0.2 1,807,605 + -0.1 1,807,606 - -0.6 1,807,606 - +0.2 1,807,606 - +0.7 1,807,606 - -0.0 1,807,606 - +2.3 1,807,606 - -1.0 1,807,606 - -0.3 1,807,606 - -0.8 1,807,796 + Xcc-8004.1875.1 0.12 +2.0 1,807,796 + Xcc-8004.1875.1 0.12 -2.0 1,807,796 + Xcc-8004.1875.1 0.12 -1.8 1,807,796 + Xcc-8004.1875.1 0.12 -0.2 1,807,797 - Xcc-8004.1875.1 0.13 -2.0 1,807,797 - Xcc-8004.1875.1 0.13 +0.3 1,807,797 - Xcc-8004.1875.1 0.13 +1.4 1,807,797 - Xcc-8004.1875.1 0.13 -1.8 1,807,797 - Xcc-8004.1875.1 0.13 -0.4 1,807,800 + Xcc-8004.1875.1 0.13 -1.1 1,807,800 + Xcc-8004.1875.1 0.13 -0.5 1,807,800 + Xcc-8004.1875.1 0.13 +1.3 1,807,800 + Xcc-8004.1875.1 0.13 -2.2 1,807,800 + Xcc-8004.1875.1 0.13 -2.2 1,807,800 + Xcc-8004.1875.1 0.13 +1.0 1,807,800 + Xcc-8004.1875.1 0.13 -1.8 1,807,800 + Xcc-8004.1875.1 0.13 +0.4 1,807,801 - Xcc-8004.1875.1 0.13 -1.1 1,807,801 - Xcc-8004.1875.1 0.13 -0.9 1,807,801 - Xcc-8004.1875.1 0.13 +1.5 1,807,801 - Xcc-8004.1875.1 0.13 +3.1 1,807,801 - Xcc-8004.1875.1 0.13 +1.5 1,807,801 - Xcc-8004.1875.1 0.13 +1.3 1,807,801 - Xcc-8004.1875.1 0.13 -0.1 1,807,801 - Xcc-8004.1875.1 0.13 +0.2 1,807,801 - Xcc-8004.1875.1 0.13 -0.1 1,807,801 - Xcc-8004.1875.1 0.13 +0.8 1,807,852 - Xcc-8004.1875.1 0.16 -1.4 1,807,978 + Xcc-8004.1875.1 0.24 +0.0 1,807,979 - Xcc-8004.1875.1 0.24 -0.1 1,808,073 + Xcc-8004.1875.1 0.31 +0.6 1,808,073 + Xcc-8004.1875.1 0.31 +0.6 1,808,073 + Xcc-8004.1875.1 0.31 -0.5 1,808,074 - Xcc-8004.1875.1 0.31 -2.7 1,808,074 - Xcc-8004.1875.1 0.31 -0.3 1,808,074 - Xcc-8004.1875.1 0.31 +1.2 1,808,080 - Xcc-8004.1875.1 0.31 +0.6 1,808,080 - Xcc-8004.1875.1 0.31 -2.5 1,808,080 - Xcc-8004.1875.1 0.31 +0.3 1,808,080 - Xcc-8004.1875.1 0.31 -1.6 1,808,080 - Xcc-8004.1875.1 0.31 +1.6 1,808,080 - Xcc-8004.1875.1 0.31 +1.2 1,808,080 - Xcc-8004.1875.1 0.31 -0.4 1,808,080 - Xcc-8004.1875.1 0.31 +0.4 1,808,080 - Xcc-8004.1875.1 0.31 -0.1 1,808,364 + Xcc-8004.1875.1 0.49 -2.0 1,808,365 - Xcc-8004.1875.1 0.50 +1.6 1,808,400 + Xcc-8004.1875.1 0.52 +1.6 1,808,400 + Xcc-8004.1875.1 0.52 -0.4 1,808,400 + Xcc-8004.1875.1 0.52 -0.6 1,808,400 + Xcc-8004.1875.1 0.52 +1.0 1,808,400 + Xcc-8004.1875.1 0.52 -0.4 1,808,401 - Xcc-8004.1875.1 0.52 +0.4 1,808,401 - Xcc-8004.1875.1 0.52 +0.3 1,808,401 - Xcc-8004.1875.1 0.52 +0.6 1,808,401 - Xcc-8004.1875.1 0.52 -0.1 1,808,511 + Xcc-8004.1875.1 0.59 -1.0 1,808,511 + Xcc-8004.1875.1 0.59 +1.1 1,808,511 + Xcc-8004.1875.1 0.59 +0.6 1,808,512 - Xcc-8004.1875.1 0.59 -0.0 1,808,512 - Xcc-8004.1875.1 0.59 -0.3 1,808,512 - Xcc-8004.1875.1 0.59 -0.0
Or see this region's nucleotide sequence