Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07665

Experiment: H2 N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07655 and MMP_RS07660 are separated by 91 nucleotidesMMP_RS07660 and MMP_RS07665 are separated by 2 nucleotidesMMP_RS07665 and MMP_RS07670 are separated by 45 nucleotidesMMP_RS07670 and MMP_RS07675 are separated by 105 nucleotides MMP_RS07655: MMP_RS07655 - bifunctional NADP phosphatase/NAD kinase, at 1,449,326 to 1,451,026 _RS07655 MMP_RS07660: MMP_RS07660 - L-seryl-tRNA(Sec) kinase, at 1,451,118 to 1,451,885 _RS07660 MMP_RS07665: MMP_RS07665 - amidohydrolase, at 1,451,888 to 1,453,156 _RS07665 MMP_RS07670: MMP_RS07670 - orotate phosphoribosyltransferase, at 1,453,202 to 1,453,759 _RS07670 MMP_RS07675: MMP_RS07675 - S-layer protein, at 1,453,865 to 1,455,208 _RS07675 Position (kb) 1451 1452 1453 1454Strain fitness (log2 ratio) -2 -1 0 1 2at 1451.041 kb on - strandat 1451.042 kb on + strandat 1451.045 kb on - strandat 1451.045 kb on - strandat 1451.045 kb on - strandat 1451.045 kb on - strandat 1451.046 kb on + strandat 1451.046 kb on + strandat 1451.046 kb on + strandat 1451.046 kb on + strandat 1451.049 kb on - strandat 1451.049 kb on - strandat 1451.052 kb on - strandat 1451.052 kb on - strandat 1451.056 kb on - strandat 1451.057 kb on + strandat 1451.333 kb on - strandat 1451.444 kb on + strandat 1451.505 kb on - strandat 1451.690 kb on - strandat 1451.866 kb on - strandat 1451.908 kb on + strandat 1451.999 kb on + strandat 1452.026 kb on - strandat 1452.198 kb on + strandat 1452.443 kb on + strandat 1452.445 kb on - strandat 1452.565 kb on + strandat 1452.817 kb on - strandat 1453.034 kb on - strandat 1453.132 kb on - strandat 1453.132 kb on - strandat 1453.148 kb on - strandat 1453.398 kb on + strandat 1453.771 kb on - strandat 1453.795 kb on - strandat 1453.798 kb on + strandat 1453.804 kb on - strandat 1453.815 kb on - strandat 1453.815 kb on - strandat 1453.815 kb on - strandat 1453.817 kb on - strandat 1453.818 kb on + strandat 1453.820 kb on - strandat 1453.821 kb on + strandat 1453.826 kb on + strandat 1453.828 kb on - strandat 1453.828 kb on - strandat 1453.829 kb on + strandat 1453.880 kb on + strandat 1453.888 kb on + strandat 1453.893 kb on - strandat 1453.897 kb on - strandat 1453.903 kb on + strandat 1453.925 kb on + strandat 1453.925 kb on + strandat 1453.925 kb on + strandat 1453.926 kb on - strandat 1453.927 kb on + strandat 1453.932 kb on + strandat 1453.932 kb on + strandat 1453.936 kb on - strandat 1453.936 kb on - strandat 1453.936 kb on - strandat 1453.944 kb on - strandat 1453.945 kb on + strandat 1454.016 kb on + strand, within MMP_RS07675at 1454.018 kb on - strand, within MMP_RS07675at 1454.081 kb on - strand, within MMP_RS07675at 1454.082 kb on + strand, within MMP_RS07675at 1454.082 kb on + strand, within MMP_RS07675at 1454.128 kb on - strand, within MMP_RS07675at 1454.129 kb on + strand, within MMP_RS07675

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
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1,451,041 - -0.9
1,451,042 + -0.9
1,451,045 - -1.0
1,451,045 - -0.7
1,451,045 - +0.1
1,451,045 - +0.5
1,451,046 + +1.0
1,451,046 + -0.7
1,451,046 + -0.2
1,451,046 + -0.2
1,451,049 - +1.2
1,451,049 - +2.1
1,451,052 - +0.2
1,451,052 - -0.6
1,451,056 - -0.9
1,451,057 + +0.4
1,451,333 - -0.4
1,451,444 + -0.3
1,451,505 - +0.3
1,451,690 - -1.3
1,451,866 - +2.2
1,451,908 + -0.4
1,451,999 + -0.7
1,452,026 - +0.3
1,452,198 + -1.3
1,452,443 + +0.0
1,452,445 - -0.0
1,452,565 + +0.4
1,452,817 - +0.9
1,453,034 - -0.4
1,453,132 - +0.5
1,453,132 - +0.5
1,453,148 - -0.3
1,453,398 + +0.5
1,453,771 - -0.9
1,453,795 - -1.0
1,453,798 + -0.3
1,453,804 - -1.6
1,453,815 - +0.0
1,453,815 - +0.1
1,453,815 - +0.3
1,453,817 - -1.0
1,453,818 + -0.5
1,453,820 - -1.2
1,453,821 + -0.0
1,453,826 + -0.6
1,453,828 - +0.6
1,453,828 - -0.4
1,453,829 + +0.3
1,453,880 + -1.4
1,453,888 + +0.3
1,453,893 - -0.0
1,453,897 - +1.0
1,453,903 + -2.6
1,453,925 + -0.0
1,453,925 + -0.4
1,453,925 + -0.9
1,453,926 - +0.9
1,453,927 + -1.0
1,453,932 + +0.8
1,453,932 + -2.4
1,453,936 - -0.2
1,453,936 - +0.2
1,453,936 - -0.7
1,453,944 - +0.9
1,453,945 + +0.1
1,454,016 + MMP_RS07675 0.11 +1.0
1,454,018 - MMP_RS07675 0.11 -1.1
1,454,081 - MMP_RS07675 0.16 +0.3
1,454,082 + MMP_RS07675 0.16 +0.3
1,454,082 + MMP_RS07675 0.16 +1.2
1,454,128 - MMP_RS07675 0.20 +0.7
1,454,129 + MMP_RS07675 0.20 -1.2

Or see this region's nucleotide sequence