Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05830

Experiment: H2 N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05820 and MMP_RS05825 are separated by 31 nucleotidesMMP_RS05825 and MMP_RS05830 are separated by 41 nucleotidesMMP_RS05830 and MMP_RS05835 are separated by 114 nucleotidesMMP_RS05835 and MMP_RS05840 are separated by 74 nucleotides MMP_RS05820: MMP_RS05820 - RNA-binding transcriptional accessory protein, at 1,116,933 to 1,119,074 _RS05820 MMP_RS05825: MMP_RS05825 - peptidyl-prolyl cis-trans isomerase, at 1,119,106 to 1,119,717 _RS05825 MMP_RS05830: MMP_RS05830 - peptidyl-prolyl cis-trans isomerase, at 1,119,759 to 1,120,247 _RS05830 MMP_RS05835: MMP_RS05835 - secondary thiamine-phosphate synthase enzyme YjbQ, at 1,120,362 to 1,120,760 _RS05835 MMP_RS05840: MMP_RS05840 - peptide chain release factor aRF-1, at 1,120,835 to 1,122,094 _RS05840 Position (kb) 1119 1120 1121Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1118.903 kb on - strandat 1118.963 kb on - strandat 1118.964 kb on + strandat 1118.983 kb on - strandat 1118.983 kb on - strandat 1119.095 kb on - strandat 1119.099 kb on - strandat 1119.100 kb on + strandat 1119.145 kb on - strandat 1119.145 kb on - strandat 1119.285 kb on + strand, within MMP_RS05825at 1119.539 kb on + strand, within MMP_RS05825at 1119.608 kb on + strand, within MMP_RS05825at 1119.649 kb on + strand, within MMP_RS05825at 1119.786 kb on - strandat 1119.787 kb on + strandat 1119.941 kb on - strand, within MMP_RS05830at 1119.973 kb on + strand, within MMP_RS05830at 1120.111 kb on + strand, within MMP_RS05830at 1120.113 kb on - strand, within MMP_RS05830at 1120.247 kb on - strandat 1120.566 kb on - strand, within MMP_RS05835at 1120.761 kb on + strandat 1120.822 kb on - strandat 1120.969 kb on - strandat 1120.969 kb on - strandat 1121.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
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1,118,903 - +1.0
1,118,963 - +1.2
1,118,964 + +1.0
1,118,983 - -1.2
1,118,983 - +0.3
1,119,095 - +1.3
1,119,099 - +0.4
1,119,100 + -0.3
1,119,145 - +0.2
1,119,145 - +0.4
1,119,285 + MMP_RS05825 0.29 +1.1
1,119,539 + MMP_RS05825 0.71 -0.2
1,119,608 + MMP_RS05825 0.82 +0.2
1,119,649 + MMP_RS05825 0.89 -1.1
1,119,786 - -3.5
1,119,787 + -0.2
1,119,941 - MMP_RS05830 0.37 +0.5
1,119,973 + MMP_RS05830 0.44 -1.7
1,120,111 + MMP_RS05830 0.72 -1.0
1,120,113 - MMP_RS05830 0.72 -2.3
1,120,247 - +3.2
1,120,566 - MMP_RS05835 0.51 -1.7
1,120,761 + +1.6
1,120,822 - +0.0
1,120,969 - +1.3
1,120,969 - -0.0
1,121,134 - +1.0

Or see this region's nucleotide sequence