Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00990

Experiment: H2 N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00985 and MMP_RS00990 are separated by 112 nucleotidesMMP_RS00990 and MMP_RS00995 are separated by 135 nucleotidesMMP_RS00995 and MMP_RS01000 are separated by 9 nucleotides MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070 _RS00985 MMP_RS00990: MMP_RS00990 - hypothetical protein, at 186,183 to 186,542 _RS00990 MMP_RS00995: MMP_RS00995 - phosphoribosylformylglycinamidine synthase I, at 186,678 to 187,487 _RS00995 MMP_RS01000: MMP_RS01000 - AIR synthase related protein, at 187,497 to 190,466 _RS01000 Position (kb) 186 187Strain fitness (log2 ratio) -1 0 1 2at 185.544 kb on - strand, within MMP_RS00985at 185.545 kb on + strand, within MMP_RS00985at 185.711 kb on - strand, within MMP_RS00985at 185.885 kb on - strandat 186.029 kb on - strandat 186.174 kb on - strandat 186.415 kb on - strand, within MMP_RS00990at 186.505 kb on - strand, within MMP_RS00990at 186.560 kb on - strandat 186.574 kb on + strandat 186.625 kb on + strandat 186.683 kb on - strandat 187.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 2mM Adenosine
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185,544 - MMP_RS00985 0.78 -1.0
185,545 + MMP_RS00985 0.78 +0.1
185,711 - MMP_RS00985 0.85 +0.1
185,885 - +1.6
186,029 - -1.3
186,174 - -1.0
186,415 - MMP_RS00990 0.64 -0.6
186,505 - MMP_RS00990 0.89 -0.3
186,560 - +1.4
186,574 + -0.7
186,625 + +0.8
186,683 - +1.9
187,170 - +0.9

Or see this region's nucleotide sequence