Strain Fitness in Pantoea sp. MT58 around IAI47_21670

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21660 and IAI47_21665 are separated by 386 nucleotidesIAI47_21665 and IAI47_21670 are separated by 239 nucleotidesIAI47_21670 and IAI47_21675 are separated by 32 nucleotides IAI47_21660: IAI47_21660 - PACE efflux transporter, at 75,363 to 75,800 _21660 IAI47_21665: IAI47_21665 - DUF333 domain-containing protein, at 76,187 to 76,435 _21665 IAI47_21670: IAI47_21670 - LuxR family transcriptional regulator, at 76,675 to 77,310 _21670 IAI47_21675: IAI47_21675 - helix-turn-helix domain-containing protein, at 77,343 to 77,933 _21675 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2 3at 75.680 kb on + strand, within IAI47_21660at 75.681 kb on - strand, within IAI47_21660at 75.681 kb on - strand, within IAI47_21660at 75.683 kb on + strand, within IAI47_21660at 75.683 kb on + strand, within IAI47_21660at 75.684 kb on - strand, within IAI47_21660at 75.684 kb on - strand, within IAI47_21660at 75.744 kb on + strand, within IAI47_21660at 75.745 kb on - strand, within IAI47_21660at 75.745 kb on - strand, within IAI47_21660at 75.745 kb on - strand, within IAI47_21660at 75.745 kb on - strand, within IAI47_21660at 75.753 kb on - strand, within IAI47_21660at 75.773 kb on + strandat 75.803 kb on + strandat 75.895 kb on + strandat 76.114 kb on + strandat 76.140 kb on - strandat 76.145 kb on - strandat 76.150 kb on + strandat 76.151 kb on - strandat 76.151 kb on - strandat 76.212 kb on - strand, within IAI47_21665at 76.331 kb on - strand, within IAI47_21665at 76.337 kb on + strand, within IAI47_21665at 76.437 kb on + strandat 76.493 kb on + strandat 76.677 kb on - strandat 76.677 kb on - strandat 76.690 kb on - strandat 76.787 kb on + strand, within IAI47_21670at 76.788 kb on - strand, within IAI47_21670at 76.792 kb on - strand, within IAI47_21670at 76.800 kb on - strand, within IAI47_21670at 76.830 kb on + strand, within IAI47_21670at 76.830 kb on + strand, within IAI47_21670at 76.848 kb on + strand, within IAI47_21670at 76.849 kb on - strand, within IAI47_21670at 76.849 kb on - strand, within IAI47_21670at 76.922 kb on + strand, within IAI47_21670at 77.033 kb on + strand, within IAI47_21670at 77.033 kb on + strand, within IAI47_21670at 77.086 kb on + strand, within IAI47_21670at 77.089 kb on + strand, within IAI47_21670at 77.089 kb on + strand, within IAI47_21670at 77.090 kb on - strand, within IAI47_21670at 77.090 kb on - strand, within IAI47_21670at 77.090 kb on - strand, within IAI47_21670at 77.090 kb on - strand, within IAI47_21670at 77.091 kb on + strand, within IAI47_21670at 77.092 kb on - strand, within IAI47_21670at 77.092 kb on - strand, within IAI47_21670at 77.133 kb on + strand, within IAI47_21670at 77.134 kb on - strand, within IAI47_21670at 77.134 kb on - strand, within IAI47_21670at 77.134 kb on - strand, within IAI47_21670at 77.134 kb on - strand, within IAI47_21670at 77.135 kb on + strand, within IAI47_21670at 77.135 kb on + strand, within IAI47_21670at 77.136 kb on - strand, within IAI47_21670at 77.231 kb on - strand, within IAI47_21670at 77.231 kb on - strand, within IAI47_21670at 77.276 kb on + strandat 77.505 kb on + strand, within IAI47_21675at 77.532 kb on - strand, within IAI47_21675at 77.541 kb on + strand, within IAI47_21675at 77.547 kb on + strand, within IAI47_21675at 77.548 kb on - strand, within IAI47_21675at 77.548 kb on - strand, within IAI47_21675at 77.548 kb on - strand, within IAI47_21675at 77.549 kb on + strand, within IAI47_21675at 77.551 kb on + strand, within IAI47_21675at 77.585 kb on + strand, within IAI47_21675at 77.592 kb on - strand, within IAI47_21675at 77.753 kb on + strand, within IAI47_21675at 77.753 kb on + strand, within IAI47_21675at 77.754 kb on - strand, within IAI47_21675at 77.754 kb on - strand, within IAI47_21675at 77.802 kb on - strand, within IAI47_21675at 77.802 kb on - strand, within IAI47_21675at 77.812 kb on - strand, within IAI47_21675at 77.834 kb on - strand, within IAI47_21675at 77.880 kb on - strandat 77.991 kb on + strandat 78.058 kb on - strandat 78.106 kb on - strandat 78.134 kb on + strandat 78.211 kb on - strandat 78.243 kb on - strandat 78.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50
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75,680 + IAI47_21660 0.72 -0.2
75,681 - IAI47_21660 0.73 -1.1
75,681 - IAI47_21660 0.73 -1.6
75,683 + IAI47_21660 0.73 -1.2
75,683 + IAI47_21660 0.73 +0.5
75,684 - IAI47_21660 0.73 -1.7
75,684 - IAI47_21660 0.73 -0.7
75,744 + IAI47_21660 0.87 +0.9
75,745 - IAI47_21660 0.87 -0.5
75,745 - IAI47_21660 0.87 -0.4
75,745 - IAI47_21660 0.87 -1.6
75,745 - IAI47_21660 0.87 +0.6
75,753 - IAI47_21660 0.89 -0.1
75,773 + -0.7
75,803 + -1.2
75,895 + +1.1
76,114 + -1.1
76,140 - -1.9
76,145 - +2.0
76,150 + +0.5
76,151 - -0.2
76,151 - -1.9
76,212 - IAI47_21665 0.10 +0.9
76,331 - IAI47_21665 0.58 +1.8
76,337 + IAI47_21665 0.60 -1.7
76,437 + +0.2
76,493 + -0.5
76,677 - +0.1
76,677 - -0.8
76,690 - -0.2
76,787 + IAI47_21670 0.18 -0.3
76,788 - IAI47_21670 0.18 -0.9
76,792 - IAI47_21670 0.18 +0.3
76,800 - IAI47_21670 0.20 -1.3
76,830 + IAI47_21670 0.24 +1.9
76,830 + IAI47_21670 0.24 -1.4
76,848 + IAI47_21670 0.27 +0.1
76,849 - IAI47_21670 0.27 +0.0
76,849 - IAI47_21670 0.27 -0.2
76,922 + IAI47_21670 0.39 +0.4
77,033 + IAI47_21670 0.56 -1.6
77,033 + IAI47_21670 0.56 -0.4
77,086 + IAI47_21670 0.65 -0.1
77,089 + IAI47_21670 0.65 -1.6
77,089 + IAI47_21670 0.65 -0.4
77,090 - IAI47_21670 0.65 -0.5
77,090 - IAI47_21670 0.65 -1.9
77,090 - IAI47_21670 0.65 -0.9
77,090 - IAI47_21670 0.65 +0.5
77,091 + IAI47_21670 0.65 -1.5
77,092 - IAI47_21670 0.66 -2.7
77,092 - IAI47_21670 0.66 -1.0
77,133 + IAI47_21670 0.72 -1.1
77,134 - IAI47_21670 0.72 +0.2
77,134 - IAI47_21670 0.72 -1.5
77,134 - IAI47_21670 0.72 -1.7
77,134 - IAI47_21670 0.72 -0.1
77,135 + IAI47_21670 0.72 -0.1
77,135 + IAI47_21670 0.72 +0.4
77,136 - IAI47_21670 0.72 -0.1
77,231 - IAI47_21670 0.87 -1.1
77,231 - IAI47_21670 0.87 +0.9
77,276 + -1.0
77,505 + IAI47_21675 0.27 +0.8
77,532 - IAI47_21675 0.32 -0.7
77,541 + IAI47_21675 0.34 -1.3
77,547 + IAI47_21675 0.35 +1.4
77,548 - IAI47_21675 0.35 -0.1
77,548 - IAI47_21675 0.35 +0.6
77,548 - IAI47_21675 0.35 +2.8
77,549 + IAI47_21675 0.35 +0.1
77,551 + IAI47_21675 0.35 -1.0
77,585 + IAI47_21675 0.41 +0.9
77,592 - IAI47_21675 0.42 -0.4
77,753 + IAI47_21675 0.69 -0.9
77,753 + IAI47_21675 0.69 -1.0
77,754 - IAI47_21675 0.70 -0.9
77,754 - IAI47_21675 0.70 +2.3
77,802 - IAI47_21675 0.78 +1.5
77,802 - IAI47_21675 0.78 +0.8
77,812 - IAI47_21675 0.79 +0.2
77,834 - IAI47_21675 0.83 -0.5
77,880 - +0.7
77,991 + -0.7
78,058 - +1.1
78,106 - +0.8
78,134 + -2.1
78,211 - -0.3
78,243 - +0.2
78,247 - -1.7

Or see this region's nucleotide sequence