Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06070

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06050 and PGA1_c06060 are separated by 183 nucleotidesPGA1_c06060 and PGA1_c06070 are separated by 19 nucleotidesPGA1_c06070 and PGA1_c06080 are separated by 40 nucleotidesPGA1_c06080 and PGA1_c06090 are separated by 3 nucleotides PGA1_c06050: PGA1_c06050 - hypothetical protein, at 619,355 to 620,662 _c06050 PGA1_c06060: PGA1_c06060 - Flp pilus assembly protein, protease CpaA, at 620,846 to 621,352 _c06060 PGA1_c06070: PGA1_c06070 - hypothetical protein, at 621,372 to 622,220 _c06070 PGA1_c06080: PGA1_c06080 - hypothetical protein, at 622,261 to 622,863 _c06080 PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847 _c06090 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1at 620.381 kb on + strand, within PGA1_c06050at 620.381 kb on + strand, within PGA1_c06050at 620.381 kb on + strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.389 kb on - strand, within PGA1_c06050at 620.435 kb on - strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.437 kb on + strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.445 kb on - strand, within PGA1_c06050at 620.485 kb on + strand, within PGA1_c06050at 620.572 kb on + strandat 620.616 kb on - strandat 620.686 kb on + strandat 620.694 kb on - strandat 620.741 kb on + strandat 620.749 kb on - strandat 620.755 kb on + strandat 620.763 kb on - strandat 620.787 kb on + strandat 620.787 kb on + strandat 620.787 kb on + strandat 620.831 kb on - strandat 620.831 kb on - strandat 620.831 kb on - strandat 620.841 kb on - strandat 620.841 kb on - strandat 620.876 kb on + strandat 620.919 kb on - strand, within PGA1_c06060at 620.962 kb on + strand, within PGA1_c06060at 620.979 kb on + strand, within PGA1_c06060at 621.046 kb on - strand, within PGA1_c06060at 621.075 kb on - strand, within PGA1_c06060at 621.103 kb on + strand, within PGA1_c06060at 621.265 kb on - strand, within PGA1_c06060at 621.294 kb on - strand, within PGA1_c06060at 621.494 kb on + strand, within PGA1_c06070at 621.534 kb on - strand, within PGA1_c06070at 621.672 kb on - strand, within PGA1_c06070at 621.674 kb on + strand, within PGA1_c06070at 621.674 kb on + strand, within PGA1_c06070at 621.682 kb on - strand, within PGA1_c06070at 621.725 kb on - strand, within PGA1_c06070at 621.737 kb on + strand, within PGA1_c06070at 621.745 kb on - strand, within PGA1_c06070at 621.745 kb on - strand, within PGA1_c06070at 621.755 kb on - strand, within PGA1_c06070at 621.831 kb on - strand, within PGA1_c06070at 621.844 kb on + strand, within PGA1_c06070at 621.852 kb on - strand, within PGA1_c06070at 621.961 kb on - strand, within PGA1_c06070at 621.966 kb on - strand, within PGA1_c06070at 621.997 kb on + strand, within PGA1_c06070at 622.004 kb on + strand, within PGA1_c06070at 622.005 kb on - strand, within PGA1_c06070at 622.040 kb on + strand, within PGA1_c06070at 622.087 kb on - strand, within PGA1_c06070at 622.155 kb on - strandat 622.172 kb on + strandat 622.230 kb on + strandat 622.235 kb on + strandat 622.245 kb on + strandat 622.253 kb on - strandat 622.253 kb on - strandat 622.355 kb on - strand, within PGA1_c06080at 622.467 kb on + strand, within PGA1_c06080at 622.505 kb on + strand, within PGA1_c06080at 622.535 kb on + strand, within PGA1_c06080at 622.553 kb on - strand, within PGA1_c06080at 622.579 kb on - strand, within PGA1_c06080at 622.601 kb on - strand, within PGA1_c06080at 622.626 kb on + strand, within PGA1_c06080at 622.635 kb on - strand, within PGA1_c06080at 622.721 kb on - strand, within PGA1_c06080at 622.721 kb on - strand, within PGA1_c06080at 622.737 kb on - strand, within PGA1_c06080at 622.844 kb on + strandat 622.895 kb on - strandat 622.900 kb on - strandat 622.905 kb on - strandat 622.918 kb on - strandat 622.941 kb on + strandat 622.949 kb on - strandat 623.007 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.033 kb on + strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.041 kb on - strand, within PGA1_c06090at 623.128 kb on - strand, within PGA1_c06090at 623.153 kb on + strand, within PGA1_c06090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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620,381 + PGA1_c06050 0.78 +0.5
620,381 + PGA1_c06050 0.78 +1.0
620,381 + PGA1_c06050 0.78 +0.5
620,389 - PGA1_c06050 0.79 -0.7
620,389 - PGA1_c06050 0.79 +0.2
620,389 - PGA1_c06050 0.79 -0.7
620,435 - PGA1_c06050 0.83 +0.9
620,437 + PGA1_c06050 0.83 -0.9
620,437 + PGA1_c06050 0.83 +0.6
620,437 + PGA1_c06050 0.83 -0.3
620,445 - PGA1_c06050 0.83 -0.5
620,445 - PGA1_c06050 0.83 +0.2
620,445 - PGA1_c06050 0.83 +0.4
620,485 + PGA1_c06050 0.86 -0.9
620,572 + +0.2
620,616 - +0.8
620,686 + +0.7
620,694 - -1.0
620,741 + +0.4
620,749 - +0.7
620,755 + -1.3
620,763 - -1.2
620,787 + -0.1
620,787 + -0.8
620,787 + -0.1
620,831 - -0.9
620,831 - +0.5
620,831 - +1.0
620,841 - +1.1
620,841 - +0.1
620,876 + -1.6
620,919 - PGA1_c06060 0.14 -2.3
620,962 + PGA1_c06060 0.23 -0.8
620,979 + PGA1_c06060 0.26 -0.2
621,046 - PGA1_c06060 0.39 +0.1
621,075 - PGA1_c06060 0.45 -1.2
621,103 + PGA1_c06060 0.51 -1.7
621,265 - PGA1_c06060 0.83 -0.1
621,294 - PGA1_c06060 0.88 -2.3
621,494 + PGA1_c06070 0.14 +0.8
621,534 - PGA1_c06070 0.19 -0.4
621,672 - PGA1_c06070 0.35 -0.4
621,674 + PGA1_c06070 0.36 -0.1
621,674 + PGA1_c06070 0.36 -0.4
621,682 - PGA1_c06070 0.37 +0.3
621,725 - PGA1_c06070 0.42 -0.9
621,737 + PGA1_c06070 0.43 +0.7
621,745 - PGA1_c06070 0.44 -1.0
621,745 - PGA1_c06070 0.44 -0.3
621,755 - PGA1_c06070 0.45 -1.1
621,831 - PGA1_c06070 0.54 -0.7
621,844 + PGA1_c06070 0.56 -0.0
621,852 - PGA1_c06070 0.57 -1.8
621,961 - PGA1_c06070 0.69 -0.6
621,966 - PGA1_c06070 0.70 -0.0
621,997 + PGA1_c06070 0.74 -0.4
622,004 + PGA1_c06070 0.74 -2.0
622,005 - PGA1_c06070 0.75 -0.2
622,040 + PGA1_c06070 0.79 -0.8
622,087 - PGA1_c06070 0.84 -0.6
622,155 - -0.3
622,172 + +0.2
622,230 + -0.3
622,235 + -0.1
622,245 + +0.5
622,253 - +0.6
622,253 - -0.5
622,355 - PGA1_c06080 0.16 +0.7
622,467 + PGA1_c06080 0.34 -0.2
622,505 + PGA1_c06080 0.40 +1.3
622,535 + PGA1_c06080 0.45 -0.4
622,553 - PGA1_c06080 0.48 -0.2
622,579 - PGA1_c06080 0.53 +1.0
622,601 - PGA1_c06080 0.56 +0.3
622,626 + PGA1_c06080 0.61 +0.1
622,635 - PGA1_c06080 0.62 +0.1
622,721 - PGA1_c06080 0.76 -2.2
622,721 - PGA1_c06080 0.76 -1.1
622,737 - PGA1_c06080 0.79 +0.2
622,844 + +0.3
622,895 - +1.0
622,900 - -1.8
622,905 - -1.2
622,918 - -0.7
622,941 + +0.3
622,949 - +0.8
623,007 + PGA1_c06090 0.14 +0.2
623,033 + PGA1_c06090 0.17 -0.8
623,033 + PGA1_c06090 0.17 -1.8
623,033 + PGA1_c06090 0.17 -0.7
623,041 - PGA1_c06090 0.18 +0.3
623,041 - PGA1_c06090 0.18 -0.1
623,041 - PGA1_c06090 0.18 -1.3
623,041 - PGA1_c06090 0.18 +1.0
623,041 - PGA1_c06090 0.18 +0.4
623,128 - PGA1_c06090 0.27 -0.2
623,153 + PGA1_c06090 0.29 +0.7

Or see this region's nucleotide sequence