Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_442 and HP15_443 overlap by 7 nucleotides HP15_443 and HP15_444 overlap by 4 nucleotides HP15_444 and HP15_445 are separated by 131 nucleotides HP15_445 and HP15_446 are separated by 23 nucleotides
HP15_442: HP15_442 - membrane protein containing Glycosyl transferase, family 2 domain, at 444,945 to 446,954
_442
HP15_443: HP15_443 - lipid A biosynthesis lauroyl acyltransferase, at 446,948 to 447,853
_443
HP15_444: HP15_444 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 447,850 to 449,271
_444
HP15_445: HP15_445 - beta 1,4 glucosyltransferase, at 449,403 to 450,197
_445
HP15_446: HP15_446 - glycosyltransferase, at 450,221 to 451,276
_446
Position (kb) 447
448
449
450 Strain fitness (log2 ratio) -1
0
1 at 449.436 kb on - strand at 449.526 kb on - strand, within HP15_445 at 449.583 kb on + strand, within HP15_445 at 449.584 kb on - strand, within HP15_445 at 449.680 kb on - strand, within HP15_445 at 449.870 kb on + strand, within HP15_445 at 449.870 kb on + strand, within HP15_445 at 449.878 kb on - strand, within HP15_445 at 449.878 kb on - strand, within HP15_445 at 449.883 kb on - strand, within HP15_445 at 449.915 kb on - strand, within HP15_445 at 450.154 kb on - strand at 450.156 kb on + strand at 450.204 kb on + strand at 450.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 449,436 - -0.7 449,526 - HP15_445 0.15 -0.5 449,583 + HP15_445 0.23 +0.0 449,584 - HP15_445 0.23 -1.3 449,680 - HP15_445 0.35 -0.3 449,870 + HP15_445 0.59 -0.5 449,870 + HP15_445 0.59 -1.1 449,878 - HP15_445 0.60 -0.6 449,878 - HP15_445 0.60 -0.0 449,883 - HP15_445 0.60 -1.5 449,915 - HP15_445 0.64 -0.5 450,154 - -0.2 450,156 + -0.5 450,204 + +0.2 450,204 + +0.0
Or see this region's nucleotide sequence