Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3926 and HP15_3927 are separated by 20 nucleotides HP15_3927 and HP15_3928 are separated by 341 nucleotides HP15_3928 and HP15_3929 are separated by 10 nucleotides
HP15_3926: HP15_3926 - acyl-CoA synthetase, at 4,155,110 to 4,156,774
_3926
HP15_3927: HP15_3927 - protein containing helix-turn-helix type 3 domain, at 4,156,795 to 4,157,160
_3927
HP15_3928: HP15_3928 - acyl-CoA dehydrogenase domain protein, at 4,157,502 to 4,158,638
_3928
HP15_3929: HP15_3929 - acyl-CoA dehydrogenase domain protein, at 4,158,649 to 4,159,845
_3929
Position (kb)
4157
4158
4159 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4156.503 kb on + strand, within HP15_3926 at 4156.600 kb on - strand, within HP15_3926 at 4156.633 kb on + strand at 4156.665 kb on + strand at 4156.945 kb on - strand, within HP15_3927 at 4157.070 kb on + strand, within HP15_3927 at 4157.078 kb on - strand, within HP15_3927 at 4157.078 kb on - strand, within HP15_3927 at 4157.087 kb on + strand, within HP15_3927 at 4157.087 kb on + strand, within HP15_3927 at 4157.090 kb on - strand, within HP15_3927 at 4157.097 kb on + strand, within HP15_3927 at 4157.353 kb on + strand at 4157.413 kb on + strand at 4157.439 kb on + strand at 4157.478 kb on - strand at 4157.518 kb on + strand at 4157.518 kb on + strand at 4157.539 kb on - strand at 4157.603 kb on - strand at 4157.603 kb on - strand at 4157.637 kb on + strand, within HP15_3928 at 4157.687 kb on - strand, within HP15_3928 at 4157.854 kb on - strand, within HP15_3928 at 4157.856 kb on + strand, within HP15_3928 at 4157.863 kb on - strand, within HP15_3928 at 4157.868 kb on + strand, within HP15_3928 at 4157.874 kb on + strand, within HP15_3928 at 4157.882 kb on - strand, within HP15_3928 at 4157.887 kb on - strand, within HP15_3928 at 4157.889 kb on + strand, within HP15_3928 at 4157.952 kb on + strand, within HP15_3928 at 4157.975 kb on + strand, within HP15_3928 at 4157.983 kb on + strand, within HP15_3928 at 4157.991 kb on - strand, within HP15_3928 at 4158.046 kb on + strand, within HP15_3928 at 4158.046 kb on + strand, within HP15_3928 at 4158.069 kb on - strand, within HP15_3928 at 4158.186 kb on + strand, within HP15_3928 at 4158.431 kb on - strand, within HP15_3928 at 4158.488 kb on - strand, within HP15_3928 at 4158.493 kb on - strand, within HP15_3928 at 4158.540 kb on + strand at 4158.557 kb on + strand at 4158.565 kb on - strand at 4158.597 kb on + strand at 4158.648 kb on + strand at 4158.787 kb on + strand, within HP15_3929 at 4158.844 kb on + strand, within HP15_3929 at 4158.975 kb on - strand, within HP15_3929 at 4159.007 kb on - strand, within HP15_3929 at 4159.021 kb on - strand, within HP15_3929 at 4159.023 kb on + strand, within HP15_3929 at 4159.090 kb on + strand, within HP15_3929 at 4159.141 kb on + strand, within HP15_3929 at 4159.141 kb on + strand, within HP15_3929 at 4159.142 kb on + strand, within HP15_3929 at 4159.149 kb on - strand, within HP15_3929 at 4159.150 kb on - strand, within HP15_3929 at 4159.179 kb on - strand, within HP15_3929 at 4159.228 kb on + strand, within HP15_3929 at 4159.257 kb on + strand, within HP15_3929 at 4159.356 kb on + strand, within HP15_3929 at 4159.364 kb on - strand, within HP15_3929 at 4159.415 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.437 kb on + strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.445 kb on - strand, within HP15_3929 at 4159.460 kb on + strand, within HP15_3929 at 4159.463 kb on - strand, within HP15_3929 at 4159.470 kb on + strand, within HP15_3929 at 4159.482 kb on - strand, within HP15_3929 at 4159.613 kb on + strand, within HP15_3929
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 4,156,503 + HP15_3926 0.84 -0.4 4,156,600 - HP15_3926 0.89 +0.1 4,156,633 + +0.4 4,156,665 + -0.3 4,156,945 - HP15_3927 0.41 +0.0 4,157,070 + HP15_3927 0.75 -0.1 4,157,078 - HP15_3927 0.77 -0.7 4,157,078 - HP15_3927 0.77 -0.0 4,157,087 + HP15_3927 0.80 -0.2 4,157,087 + HP15_3927 0.80 +0.3 4,157,090 - HP15_3927 0.81 -0.2 4,157,097 + HP15_3927 0.83 -0.5 4,157,353 + -0.5 4,157,413 + +0.5 4,157,439 + +0.0 4,157,478 - +0.6 4,157,518 + +0.5 4,157,518 + +0.6 4,157,539 - +1.5 4,157,603 - +1.1 4,157,603 - +1.4 4,157,637 + HP15_3928 0.12 +1.5 4,157,687 - HP15_3928 0.16 +0.3 4,157,854 - HP15_3928 0.31 +0.7 4,157,856 + HP15_3928 0.31 -0.4 4,157,863 - HP15_3928 0.32 +0.7 4,157,868 + HP15_3928 0.32 +0.6 4,157,874 + HP15_3928 0.33 +1.3 4,157,882 - HP15_3928 0.33 +1.1 4,157,887 - HP15_3928 0.34 +1.4 4,157,889 + HP15_3928 0.34 +1.4 4,157,952 + HP15_3928 0.40 +0.4 4,157,975 + HP15_3928 0.42 +1.2 4,157,983 + HP15_3928 0.42 +0.8 4,157,991 - HP15_3928 0.43 +1.4 4,158,046 + HP15_3928 0.48 +1.4 4,158,046 + HP15_3928 0.48 +1.0 4,158,069 - HP15_3928 0.50 +0.8 4,158,186 + HP15_3928 0.60 +1.9 4,158,431 - HP15_3928 0.82 +0.6 4,158,488 - HP15_3928 0.87 +1.3 4,158,493 - HP15_3928 0.87 +0.7 4,158,540 + +1.1 4,158,557 + +1.2 4,158,565 - +0.6 4,158,597 + +1.1 4,158,648 + +0.7 4,158,787 + HP15_3929 0.12 +0.2 4,158,844 + HP15_3929 0.16 +1.1 4,158,975 - HP15_3929 0.27 +1.1 4,159,007 - HP15_3929 0.30 +0.9 4,159,021 - HP15_3929 0.31 +1.7 4,159,023 + HP15_3929 0.31 +2.0 4,159,090 + HP15_3929 0.37 +0.9 4,159,141 + HP15_3929 0.41 +1.4 4,159,141 + HP15_3929 0.41 +0.9 4,159,142 + HP15_3929 0.41 +1.5 4,159,149 - HP15_3929 0.42 +1.4 4,159,150 - HP15_3929 0.42 +1.6 4,159,179 - HP15_3929 0.44 +0.5 4,159,228 + HP15_3929 0.48 +1.0 4,159,257 + HP15_3929 0.51 +1.0 4,159,356 + HP15_3929 0.59 +0.8 4,159,364 - HP15_3929 0.60 +0.8 4,159,415 + HP15_3929 0.64 +1.2 4,159,437 + HP15_3929 0.66 +1.3 4,159,437 + HP15_3929 0.66 +1.2 4,159,437 + HP15_3929 0.66 +1.2 4,159,445 - HP15_3929 0.66 +0.9 4,159,445 - HP15_3929 0.66 +0.6 4,159,445 - HP15_3929 0.66 +1.0 4,159,445 - HP15_3929 0.66 +1.3 4,159,445 - HP15_3929 0.66 +1.1 4,159,460 + HP15_3929 0.68 +1.9 4,159,463 - HP15_3929 0.68 +3.4 4,159,470 + HP15_3929 0.69 +1.2 4,159,482 - HP15_3929 0.70 +1.2 4,159,613 + HP15_3929 0.81 +1.1
Or see this region's nucleotide sequence