Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00070 and PGA1_65p00080 are separated by 117 nucleotides PGA1_65p00080 and PGA1_65p00090 are separated by 261 nucleotides
PGA1_65p00070: PGA1_65p00070 - putative regulatory protein, LuxR family, at 10,417 to 11,217
_65p00070
PGA1_65p00080: PGA1_65p00080 - putative glycosyl transferase, at 11,335 to 12,579
_65p00080
PGA1_65p00090: PGA1_65p00090 - Uncharacterized conserved protein, at 12,841 to 14,850
_65p00090
Position (kb)
11
12
13 Strain fitness (log2 ratio)
-2
-1
0
1 at 10.345 kb on + strand at 10.461 kb on - strand at 10.612 kb on - strand, within PGA1_65p00070 at 10.613 kb on - strand, within PGA1_65p00070 at 10.614 kb on + strand, within PGA1_65p00070 at 10.691 kb on + strand, within PGA1_65p00070 at 11.219 kb on - strand at 11.234 kb on - strand at 11.241 kb on + strand at 11.442 kb on - strand at 11.749 kb on - strand, within PGA1_65p00080 at 11.785 kb on - strand, within PGA1_65p00080 at 11.802 kb on + strand, within PGA1_65p00080 at 11.869 kb on - strand, within PGA1_65p00080 at 12.021 kb on + strand, within PGA1_65p00080 at 12.053 kb on + strand, within PGA1_65p00080 at 12.083 kb on - strand, within PGA1_65p00080 at 12.139 kb on - strand, within PGA1_65p00080 at 12.155 kb on + strand, within PGA1_65p00080 at 12.251 kb on + strand, within PGA1_65p00080 at 12.646 kb on - strand at 12.814 kb on + strand at 12.912 kb on - strand at 13.044 kb on + strand, within PGA1_65p00090 at 13.052 kb on + strand, within PGA1_65p00090 at 13.074 kb on + strand, within PGA1_65p00090 at 13.088 kb on - strand, within PGA1_65p00090 at 13.088 kb on - strand, within PGA1_65p00090 at 13.372 kb on + strand, within PGA1_65p00090 at 13.372 kb on + strand, within PGA1_65p00090 at 13.390 kb on - strand, within PGA1_65p00090 at 13.441 kb on + strand, within PGA1_65p00090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 10,345 + +0.3 10,461 - -0.2 10,612 - PGA1_65p00070 0.24 +0.2 10,613 - PGA1_65p00070 0.24 -1.5 10,614 + PGA1_65p00070 0.25 -0.8 10,691 + PGA1_65p00070 0.34 -1.3 11,219 - -1.1 11,234 - -0.8 11,241 + +0.9 11,442 - +0.1 11,749 - PGA1_65p00080 0.33 -0.7 11,785 - PGA1_65p00080 0.36 -0.6 11,802 + PGA1_65p00080 0.38 +0.2 11,869 - PGA1_65p00080 0.43 -1.1 12,021 + PGA1_65p00080 0.55 -0.9 12,053 + PGA1_65p00080 0.58 +0.9 12,083 - PGA1_65p00080 0.60 -1.8 12,139 - PGA1_65p00080 0.65 -0.3 12,155 + PGA1_65p00080 0.66 +0.1 12,251 + PGA1_65p00080 0.74 -0.9 12,646 - +0.5 12,814 + -0.3 12,912 - -0.0 13,044 + PGA1_65p00090 0.10 +0.1 13,052 + PGA1_65p00090 0.10 +0.1 13,074 + PGA1_65p00090 0.12 -1.7 13,088 - PGA1_65p00090 0.12 +1.1 13,088 - PGA1_65p00090 0.12 +0.4 13,372 + PGA1_65p00090 0.26 +0.4 13,372 + PGA1_65p00090 0.26 +1.0 13,390 - PGA1_65p00090 0.27 -0.5 13,441 + PGA1_65p00090 0.30 -1.0
Or see this region's nucleotide sequence