Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02220 and PGA1_262p02230 are separated by 94 nucleotides PGA1_262p02230 and PGA1_262p02240 overlap by 4 nucleotides PGA1_262p02240 and PGA1_262p02250 overlap by 1 nucleotides
PGA1_262p02220: PGA1_262p02220 - ABC transporter, periplasmic solute-binding protein, at 239,789 to 240,859
_262p02220
PGA1_262p02230: PGA1_262p02230 - zinc uptake regulation protein zur-like protein, at 240,954 to 241,436
_262p02230
PGA1_262p02240: PGA1_262p02240 - zinc import ATP-binding protein ZnuC, at 241,433 to 242,209
_262p02240
PGA1_262p02250: PGA1_262p02250 - high-affinity zinc uptake system membrane protein ZnuB, at 242,209 to 243,006
_262p02250
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 240.890 kb on - strand at 240.953 kb on + strand at 240.961 kb on - strand at 241.231 kb on + strand, within PGA1_262p02230 at 241.345 kb on - strand, within PGA1_262p02230 at 241.439 kb on - strand at 242.107 kb on - strand, within PGA1_262p02240 at 242.150 kb on + strand at 242.150 kb on + strand at 242.150 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 240,890 - -0.6 240,953 + +0.5 240,961 - -0.3 241,231 + PGA1_262p02230 0.57 +0.1 241,345 - PGA1_262p02230 0.81 -1.3 241,439 - +0.5 242,107 - PGA1_262p02240 0.87 -0.3 242,150 + -0.8 242,150 + -3.0 242,150 + +0.6
Or see this region's nucleotide sequence