Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3371 and HP15_3372 are separated by 50 nucleotides HP15_3372 and HP15_3373 are separated by 170 nucleotides HP15_3373 and HP15_3374 are separated by 239 nucleotides HP15_3374 and HP15_3375 are separated by 17 nucleotides
HP15_3371: HP15_3371 - dienelactone hydrolase family protein, at 3,538,162 to 3,538,965
_3371
HP15_3372: HP15_3372 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,539,016 to 3,539,711
_3372
HP15_3373: HP15_3373 - cold shock, CspA, at 3,539,882 to 3,540,088
_3373
HP15_3374: HP15_3374 - protein CrcB-like protein, at 3,540,328 to 3,540,708
_3374
HP15_3375: HP15_3375 - acyl-coenzyme A dehydrogenase, at 3,540,726 to 3,543,176
_3375
Position (kb)
3539
3540
3541 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3538.960 kb on + strand at 3538.968 kb on - strand at 3538.972 kb on + strand at 3539.027 kb on + strand at 3539.027 kb on + strand at 3539.035 kb on - strand at 3539.035 kb on - strand at 3539.074 kb on + strand at 3539.119 kb on + strand, within HP15_3372 at 3539.127 kb on - strand, within HP15_3372 at 3539.134 kb on - strand, within HP15_3372 at 3539.317 kb on + strand, within HP15_3372 at 3539.327 kb on + strand, within HP15_3372 at 3539.383 kb on + strand, within HP15_3372 at 3539.438 kb on + strand, within HP15_3372 at 3539.580 kb on + strand, within HP15_3372 at 3539.674 kb on - strand at 3539.674 kb on - strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.918 kb on - strand, within HP15_3373 at 3540.146 kb on + strand at 3540.197 kb on + strand at 3540.375 kb on + strand, within HP15_3374 at 3540.402 kb on - strand, within HP15_3374 at 3540.575 kb on + strand, within HP15_3374 at 3540.703 kb on + strand at 3540.708 kb on + strand at 3540.867 kb on + strand at 3540.885 kb on - strand at 3540.969 kb on + strand at 3540.969 kb on + strand at 3540.977 kb on - strand, within HP15_3375
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,538,960 + +0.2 3,538,968 - +0.2 3,538,972 + -2.1 3,539,027 + +0.4 3,539,027 + +0.2 3,539,035 - +0.2 3,539,035 - +0.2 3,539,074 + -0.4 3,539,119 + HP15_3372 0.15 -0.1 3,539,127 - HP15_3372 0.16 -0.7 3,539,134 - HP15_3372 0.17 -1.3 3,539,317 + HP15_3372 0.43 -0.7 3,539,327 + HP15_3372 0.45 -0.1 3,539,383 + HP15_3372 0.53 +0.2 3,539,438 + HP15_3372 0.61 -1.5 3,539,580 + HP15_3372 0.81 -0.5 3,539,674 - -0.1 3,539,674 - +0.4 3,539,692 + +0.9 3,539,692 + +0.6 3,539,692 + +0.0 3,539,918 - HP15_3373 0.17 -2.3 3,540,146 + -1.9 3,540,197 + -1.1 3,540,375 + HP15_3374 0.12 -4.1 3,540,402 - HP15_3374 0.19 -2.9 3,540,575 + HP15_3374 0.65 -4.1 3,540,703 + -0.7 3,540,708 + -1.6 3,540,867 + -0.8 3,540,885 - +0.0 3,540,969 + -0.4 3,540,969 + -0.6 3,540,977 - HP15_3375 0.10 -0.5
Or see this region's nucleotide sequence