Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3250 and HP15_3251 overlap by 1 nucleotides HP15_3251 and HP15_3252 are separated by 63 nucleotides
HP15_3250: HP15_3250 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,403,894 to 3,405,207
_3250
HP15_3251: HP15_3251 - geranylgeranyl reductase, at 3,405,207 to 3,406,331
_3251
HP15_3252: HP15_3252 - alkaline phosphatase-like protein, at 3,406,395 to 3,408,119
_3252
Position (kb)
3405
3406
3407 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3404.245 kb on - strand, within HP15_3250 at 3404.283 kb on + strand, within HP15_3250 at 3404.348 kb on - strand, within HP15_3250 at 3404.357 kb on + strand, within HP15_3250 at 3404.415 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.455 kb on - strand, within HP15_3250 at 3404.506 kb on - strand, within HP15_3250 at 3404.506 kb on - strand, within HP15_3250 at 3404.632 kb on - strand, within HP15_3250 at 3404.819 kb on + strand, within HP15_3250 at 3404.946 kb on - strand, within HP15_3250 at 3404.972 kb on - strand, within HP15_3250 at 3404.976 kb on + strand, within HP15_3250 at 3404.984 kb on - strand, within HP15_3250 at 3405.124 kb on + strand at 3405.154 kb on + strand at 3405.204 kb on - strand at 3405.278 kb on - strand at 3405.324 kb on + strand, within HP15_3251 at 3405.332 kb on - strand, within HP15_3251 at 3405.347 kb on - strand, within HP15_3251 at 3405.347 kb on - strand, within HP15_3251 at 3405.351 kb on - strand, within HP15_3251 at 3405.367 kb on - strand, within HP15_3251 at 3405.498 kb on - strand, within HP15_3251 at 3405.565 kb on + strand, within HP15_3251 at 3405.615 kb on - strand, within HP15_3251 at 3405.627 kb on - strand, within HP15_3251 at 3405.652 kb on - strand, within HP15_3251 at 3405.751 kb on + strand, within HP15_3251 at 3405.800 kb on + strand, within HP15_3251 at 3405.802 kb on - strand, within HP15_3251 at 3405.848 kb on + strand, within HP15_3251 at 3405.877 kb on - strand, within HP15_3251 at 3405.924 kb on + strand, within HP15_3251 at 3405.924 kb on + strand, within HP15_3251 at 3405.937 kb on - strand, within HP15_3251 at 3405.959 kb on - strand, within HP15_3251 at 3405.973 kb on - strand, within HP15_3251 at 3406.032 kb on - strand, within HP15_3251 at 3406.128 kb on - strand, within HP15_3251 at 3406.218 kb on + strand, within HP15_3251 at 3406.227 kb on + strand at 3406.291 kb on - strand at 3406.428 kb on + strand at 3406.431 kb on - strand at 3406.436 kb on - strand at 3406.436 kb on - strand at 3406.469 kb on + strand at 3406.634 kb on - strand, within HP15_3252 at 3406.787 kb on + strand, within HP15_3252 at 3406.795 kb on - strand, within HP15_3252 at 3406.795 kb on - strand, within HP15_3252 at 3406.835 kb on + strand, within HP15_3252 at 3406.868 kb on + strand, within HP15_3252 at 3406.868 kb on + strand, within HP15_3252 at 3406.876 kb on - strand, within HP15_3252 at 3406.876 kb on - strand, within HP15_3252 at 3406.876 kb on - strand, within HP15_3252 at 3406.878 kb on + strand, within HP15_3252 at 3406.944 kb on - strand, within HP15_3252 at 3406.971 kb on + strand, within HP15_3252 at 3407.085 kb on + strand, within HP15_3252 at 3407.211 kb on + strand, within HP15_3252 at 3407.211 kb on + strand, within HP15_3252
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,404,245 - HP15_3250 0.27 +0.3 3,404,283 + HP15_3250 0.30 +0.0 3,404,348 - HP15_3250 0.35 +0.5 3,404,357 + HP15_3250 0.35 +0.0 3,404,415 + HP15_3250 0.40 -0.8 3,404,447 + HP15_3250 0.42 -0.0 3,404,447 + HP15_3250 0.42 +0.2 3,404,447 + HP15_3250 0.42 -0.3 3,404,455 - HP15_3250 0.43 +0.2 3,404,506 - HP15_3250 0.47 +0.9 3,404,506 - HP15_3250 0.47 +1.0 3,404,632 - HP15_3250 0.56 +1.5 3,404,819 + HP15_3250 0.70 +0.2 3,404,946 - HP15_3250 0.80 -0.7 3,404,972 - HP15_3250 0.82 +0.3 3,404,976 + HP15_3250 0.82 +1.4 3,404,984 - HP15_3250 0.83 +0.6 3,405,124 + -0.7 3,405,154 + +1.3 3,405,204 - +0.1 3,405,278 - +0.8 3,405,324 + HP15_3251 0.10 +0.6 3,405,332 - HP15_3251 0.11 +0.1 3,405,347 - HP15_3251 0.12 +0.3 3,405,347 - HP15_3251 0.12 +0.8 3,405,351 - HP15_3251 0.13 +0.3 3,405,367 - HP15_3251 0.14 -0.2 3,405,498 - HP15_3251 0.26 +0.1 3,405,565 + HP15_3251 0.32 +1.8 3,405,615 - HP15_3251 0.36 +0.1 3,405,627 - HP15_3251 0.37 +0.0 3,405,652 - HP15_3251 0.40 +0.2 3,405,751 + HP15_3251 0.48 +0.3 3,405,800 + HP15_3251 0.53 +0.9 3,405,802 - HP15_3251 0.53 -0.4 3,405,848 + HP15_3251 0.57 +0.1 3,405,877 - HP15_3251 0.60 +0.4 3,405,924 + HP15_3251 0.64 +2.7 3,405,924 + HP15_3251 0.64 +0.7 3,405,937 - HP15_3251 0.65 +0.3 3,405,959 - HP15_3251 0.67 +0.4 3,405,973 - HP15_3251 0.68 +0.2 3,406,032 - HP15_3251 0.73 +0.5 3,406,128 - HP15_3251 0.82 +0.0 3,406,218 + HP15_3251 0.90 +0.1 3,406,227 + -0.8 3,406,291 - -0.1 3,406,428 + +0.5 3,406,431 - -0.1 3,406,436 - +0.1 3,406,436 - +0.3 3,406,469 + +0.1 3,406,634 - HP15_3252 0.14 -1.9 3,406,787 + HP15_3252 0.23 -0.0 3,406,795 - HP15_3252 0.23 +0.2 3,406,795 - HP15_3252 0.23 +0.3 3,406,835 + HP15_3252 0.26 +1.7 3,406,868 + HP15_3252 0.27 -0.1 3,406,868 + HP15_3252 0.27 -0.2 3,406,876 - HP15_3252 0.28 -0.4 3,406,876 - HP15_3252 0.28 -0.3 3,406,876 - HP15_3252 0.28 +0.4 3,406,878 + HP15_3252 0.28 +0.6 3,406,944 - HP15_3252 0.32 +0.1 3,406,971 + HP15_3252 0.33 +0.2 3,407,085 + HP15_3252 0.40 +0.3 3,407,211 + HP15_3252 0.47 -0.7 3,407,211 + HP15_3252 0.47 +0.2
Or see this region's nucleotide sequence