Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3185 and HP15_3186 are separated by 424 nucleotides HP15_3186 and HP15_3187 are separated by 139 nucleotides
HP15_3185: HP15_3185 - conserved hypothetical protein containing DUF1745, at 3,339,697 to 3,340,680
_3185
HP15_3186: HP15_3186 - conserved hypothetical protein, secreted, at 3,341,105 to 3,342,253
_3186
HP15_3187: HP15_3187 - uncharacterized protein family UPF0089-like protein, at 3,342,393 to 3,343,799
_3187
Position (kb)
3341
3342
3343 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3340.116 kb on - strand, within HP15_3185 at 3340.141 kb on + strand, within HP15_3185 at 3340.190 kb on - strand, within HP15_3185 at 3340.190 kb on - strand, within HP15_3185 at 3340.190 kb on - strand, within HP15_3185 at 3340.226 kb on - strand, within HP15_3185 at 3340.235 kb on + strand, within HP15_3185 at 3340.235 kb on + strand, within HP15_3185 at 3340.274 kb on + strand, within HP15_3185 at 3340.274 kb on + strand, within HP15_3185 at 3340.304 kb on + strand, within HP15_3185 at 3340.334 kb on + strand, within HP15_3185 at 3340.400 kb on - strand, within HP15_3185 at 3340.427 kb on + strand, within HP15_3185 at 3340.462 kb on + strand, within HP15_3185 at 3340.502 kb on + strand, within HP15_3185 at 3340.550 kb on - strand, within HP15_3185 at 3340.597 kb on + strand at 3340.682 kb on + strand at 3340.691 kb on - strand at 3340.706 kb on + strand at 3340.714 kb on - strand at 3340.755 kb on + strand at 3341.024 kb on + strand at 3341.031 kb on - strand at 3341.065 kb on - strand at 3341.103 kb on + strand at 3341.103 kb on + strand at 3341.111 kb on - strand at 3341.130 kb on - strand at 3341.143 kb on + strand at 3341.197 kb on - strand at 3341.333 kb on - strand, within HP15_3186 at 3341.505 kb on + strand, within HP15_3186 at 3341.531 kb on + strand, within HP15_3186 at 3341.544 kb on - strand, within HP15_3186 at 3341.552 kb on - strand, within HP15_3186 at 3341.559 kb on - strand, within HP15_3186 at 3341.708 kb on + strand, within HP15_3186 at 3341.712 kb on - strand, within HP15_3186 at 3341.854 kb on + strand, within HP15_3186 at 3341.862 kb on + strand, within HP15_3186 at 3341.867 kb on + strand, within HP15_3186 at 3341.875 kb on - strand, within HP15_3186 at 3341.958 kb on - strand, within HP15_3186 at 3341.961 kb on + strand, within HP15_3186 at 3341.969 kb on - strand, within HP15_3186 at 3342.006 kb on - strand, within HP15_3186 at 3342.113 kb on + strand, within HP15_3186 at 3342.250 kb on - strand at 3342.599 kb on - strand, within HP15_3187 at 3342.615 kb on + strand, within HP15_3187 at 3342.620 kb on + strand, within HP15_3187 at 3342.639 kb on + strand, within HP15_3187 at 3342.710 kb on - strand, within HP15_3187 at 3342.710 kb on - strand, within HP15_3187 at 3342.847 kb on + strand, within HP15_3187 at 3342.855 kb on - strand, within HP15_3187 at 3343.037 kb on + strand, within HP15_3187 at 3343.045 kb on - strand, within HP15_3187 at 3343.060 kb on + strand, within HP15_3187 at 3343.070 kb on - strand, within HP15_3187 at 3343.116 kb on - strand, within HP15_3187 at 3343.144 kb on - strand, within HP15_3187 at 3343.146 kb on + strand, within HP15_3187 at 3343.154 kb on - strand, within HP15_3187 at 3343.154 kb on - strand, within HP15_3187 at 3343.154 kb on - strand, within HP15_3187 at 3343.154 kb on - strand, within HP15_3187
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,340,116 - HP15_3185 0.43 +0.0 3,340,141 + HP15_3185 0.45 -0.5 3,340,190 - HP15_3185 0.50 -0.6 3,340,190 - HP15_3185 0.50 +0.8 3,340,190 - HP15_3185 0.50 -0.8 3,340,226 - HP15_3185 0.54 -0.4 3,340,235 + HP15_3185 0.55 -0.1 3,340,235 + HP15_3185 0.55 +0.0 3,340,274 + HP15_3185 0.59 -0.0 3,340,274 + HP15_3185 0.59 +0.4 3,340,304 + HP15_3185 0.62 -0.7 3,340,334 + HP15_3185 0.65 +0.6 3,340,400 - HP15_3185 0.71 -0.7 3,340,427 + HP15_3185 0.74 -0.9 3,340,462 + HP15_3185 0.78 -0.2 3,340,502 + HP15_3185 0.82 -0.4 3,340,550 - HP15_3185 0.87 -1.3 3,340,597 + -0.5 3,340,682 + -0.6 3,340,691 - -2.1 3,340,706 + -0.1 3,340,714 - +0.2 3,340,755 + -0.5 3,341,024 + -0.2 3,341,031 - -0.2 3,341,065 - -0.2 3,341,103 + +0.5 3,341,103 + -0.7 3,341,111 - -0.6 3,341,130 - -1.3 3,341,143 + +0.1 3,341,197 - -0.2 3,341,333 - HP15_3186 0.20 +0.8 3,341,505 + HP15_3186 0.35 +1.0 3,341,531 + HP15_3186 0.37 +0.4 3,341,544 - HP15_3186 0.38 +0.1 3,341,552 - HP15_3186 0.39 +1.1 3,341,559 - HP15_3186 0.40 +0.6 3,341,708 + HP15_3186 0.52 +2.1 3,341,712 - HP15_3186 0.53 +0.6 3,341,854 + HP15_3186 0.65 -0.1 3,341,862 + HP15_3186 0.66 +0.7 3,341,867 + HP15_3186 0.66 -0.1 3,341,875 - HP15_3186 0.67 -1.1 3,341,958 - HP15_3186 0.74 -0.4 3,341,961 + HP15_3186 0.74 +0.9 3,341,969 - HP15_3186 0.75 +1.6 3,342,006 - HP15_3186 0.78 +0.6 3,342,113 + HP15_3186 0.88 +2.0 3,342,250 - -0.5 3,342,599 - HP15_3187 0.15 -0.9 3,342,615 + HP15_3187 0.16 +0.2 3,342,620 + HP15_3187 0.16 -0.3 3,342,639 + HP15_3187 0.17 +0.4 3,342,710 - HP15_3187 0.23 -0.2 3,342,710 - HP15_3187 0.23 +0.3 3,342,847 + HP15_3187 0.32 -0.2 3,342,855 - HP15_3187 0.33 +0.0 3,343,037 + HP15_3187 0.46 +0.1 3,343,045 - HP15_3187 0.46 -0.4 3,343,060 + HP15_3187 0.47 -0.3 3,343,070 - HP15_3187 0.48 +1.1 3,343,116 - HP15_3187 0.51 -0.7 3,343,144 - HP15_3187 0.53 +0.4 3,343,146 + HP15_3187 0.54 +0.6 3,343,154 - HP15_3187 0.54 +0.2 3,343,154 - HP15_3187 0.54 +0.3 3,343,154 - HP15_3187 0.54 -0.1 3,343,154 - HP15_3187 0.54 +1.4
Or see this region's nucleotide sequence