Strain Fitness in Marinobacter adhaerens HP15 around HP15_3186

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3185 and HP15_3186 are separated by 424 nucleotidesHP15_3186 and HP15_3187 are separated by 139 nucleotides HP15_3185: HP15_3185 - conserved hypothetical protein containing DUF1745, at 3,339,697 to 3,340,680 _3185 HP15_3186: HP15_3186 - conserved hypothetical protein, secreted, at 3,341,105 to 3,342,253 _3186 HP15_3187: HP15_3187 - uncharacterized protein family UPF0089-like protein, at 3,342,393 to 3,343,799 _3187 Position (kb) 3341 3342 3343Strain fitness (log2 ratio) -2 -1 0 1 2at 3340.116 kb on - strand, within HP15_3185at 3340.141 kb on + strand, within HP15_3185at 3340.190 kb on - strand, within HP15_3185at 3340.190 kb on - strand, within HP15_3185at 3340.190 kb on - strand, within HP15_3185at 3340.226 kb on - strand, within HP15_3185at 3340.235 kb on + strand, within HP15_3185at 3340.235 kb on + strand, within HP15_3185at 3340.274 kb on + strand, within HP15_3185at 3340.274 kb on + strand, within HP15_3185at 3340.304 kb on + strand, within HP15_3185at 3340.334 kb on + strand, within HP15_3185at 3340.400 kb on - strand, within HP15_3185at 3340.427 kb on + strand, within HP15_3185at 3340.462 kb on + strand, within HP15_3185at 3340.502 kb on + strand, within HP15_3185at 3340.550 kb on - strand, within HP15_3185at 3340.597 kb on + strandat 3340.682 kb on + strandat 3340.691 kb on - strandat 3340.706 kb on + strandat 3340.714 kb on - strandat 3340.755 kb on + strandat 3341.024 kb on + strandat 3341.031 kb on - strandat 3341.065 kb on - strandat 3341.103 kb on + strandat 3341.103 kb on + strandat 3341.111 kb on - strandat 3341.130 kb on - strandat 3341.143 kb on + strandat 3341.197 kb on - strandat 3341.333 kb on - strand, within HP15_3186at 3341.505 kb on + strand, within HP15_3186at 3341.531 kb on + strand, within HP15_3186at 3341.544 kb on - strand, within HP15_3186at 3341.552 kb on - strand, within HP15_3186at 3341.559 kb on - strand, within HP15_3186at 3341.708 kb on + strand, within HP15_3186at 3341.712 kb on - strand, within HP15_3186at 3341.854 kb on + strand, within HP15_3186at 3341.862 kb on + strand, within HP15_3186at 3341.867 kb on + strand, within HP15_3186at 3341.875 kb on - strand, within HP15_3186at 3341.958 kb on - strand, within HP15_3186at 3341.961 kb on + strand, within HP15_3186at 3341.969 kb on - strand, within HP15_3186at 3342.006 kb on - strand, within HP15_3186at 3342.113 kb on + strand, within HP15_3186at 3342.250 kb on - strandat 3342.599 kb on - strand, within HP15_3187at 3342.615 kb on + strand, within HP15_3187at 3342.620 kb on + strand, within HP15_3187at 3342.639 kb on + strand, within HP15_3187at 3342.710 kb on - strand, within HP15_3187at 3342.710 kb on - strand, within HP15_3187at 3342.847 kb on + strand, within HP15_3187at 3342.855 kb on - strand, within HP15_3187at 3343.037 kb on + strand, within HP15_3187at 3343.045 kb on - strand, within HP15_3187at 3343.060 kb on + strand, within HP15_3187at 3343.070 kb on - strand, within HP15_3187at 3343.116 kb on - strand, within HP15_3187at 3343.144 kb on - strand, within HP15_3187at 3343.146 kb on + strand, within HP15_3187at 3343.154 kb on - strand, within HP15_3187at 3343.154 kb on - strand, within HP15_3187at 3343.154 kb on - strand, within HP15_3187at 3343.154 kb on - strand, within HP15_3187

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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3,340,116 - HP15_3185 0.43 +0.0
3,340,141 + HP15_3185 0.45 -0.5
3,340,190 - HP15_3185 0.50 -0.6
3,340,190 - HP15_3185 0.50 +0.8
3,340,190 - HP15_3185 0.50 -0.8
3,340,226 - HP15_3185 0.54 -0.4
3,340,235 + HP15_3185 0.55 -0.1
3,340,235 + HP15_3185 0.55 +0.0
3,340,274 + HP15_3185 0.59 -0.0
3,340,274 + HP15_3185 0.59 +0.4
3,340,304 + HP15_3185 0.62 -0.7
3,340,334 + HP15_3185 0.65 +0.6
3,340,400 - HP15_3185 0.71 -0.7
3,340,427 + HP15_3185 0.74 -0.9
3,340,462 + HP15_3185 0.78 -0.2
3,340,502 + HP15_3185 0.82 -0.4
3,340,550 - HP15_3185 0.87 -1.3
3,340,597 + -0.5
3,340,682 + -0.6
3,340,691 - -2.1
3,340,706 + -0.1
3,340,714 - +0.2
3,340,755 + -0.5
3,341,024 + -0.2
3,341,031 - -0.2
3,341,065 - -0.2
3,341,103 + +0.5
3,341,103 + -0.7
3,341,111 - -0.6
3,341,130 - -1.3
3,341,143 + +0.1
3,341,197 - -0.2
3,341,333 - HP15_3186 0.20 +0.8
3,341,505 + HP15_3186 0.35 +1.0
3,341,531 + HP15_3186 0.37 +0.4
3,341,544 - HP15_3186 0.38 +0.1
3,341,552 - HP15_3186 0.39 +1.1
3,341,559 - HP15_3186 0.40 +0.6
3,341,708 + HP15_3186 0.52 +2.1
3,341,712 - HP15_3186 0.53 +0.6
3,341,854 + HP15_3186 0.65 -0.1
3,341,862 + HP15_3186 0.66 +0.7
3,341,867 + HP15_3186 0.66 -0.1
3,341,875 - HP15_3186 0.67 -1.1
3,341,958 - HP15_3186 0.74 -0.4
3,341,961 + HP15_3186 0.74 +0.9
3,341,969 - HP15_3186 0.75 +1.6
3,342,006 - HP15_3186 0.78 +0.6
3,342,113 + HP15_3186 0.88 +2.0
3,342,250 - -0.5
3,342,599 - HP15_3187 0.15 -0.9
3,342,615 + HP15_3187 0.16 +0.2
3,342,620 + HP15_3187 0.16 -0.3
3,342,639 + HP15_3187 0.17 +0.4
3,342,710 - HP15_3187 0.23 -0.2
3,342,710 - HP15_3187 0.23 +0.3
3,342,847 + HP15_3187 0.32 -0.2
3,342,855 - HP15_3187 0.33 +0.0
3,343,037 + HP15_3187 0.46 +0.1
3,343,045 - HP15_3187 0.46 -0.4
3,343,060 + HP15_3187 0.47 -0.3
3,343,070 - HP15_3187 0.48 +1.1
3,343,116 - HP15_3187 0.51 -0.7
3,343,144 - HP15_3187 0.53 +0.4
3,343,146 + HP15_3187 0.54 +0.6
3,343,154 - HP15_3187 0.54 +0.2
3,343,154 - HP15_3187 0.54 +0.3
3,343,154 - HP15_3187 0.54 -0.1
3,343,154 - HP15_3187 0.54 +1.4

Or see this region's nucleotide sequence