Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03320 and PGA1_c03330 are separated by 140 nucleotides PGA1_c03330 and PGA1_c03340 overlap by 11 nucleotides PGA1_c03340 and PGA1_c03350 are separated by 75 nucleotides
PGA1_c03320: PGA1_c03320 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 316,985 to 318,634
_c03320
PGA1_c03330: PGA1_c03330 - tetratricopeptide repeat-containing protein, at 318,775 to 320,523
_c03330
PGA1_c03340: PGA1_c03340 - putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 320,513 to 321,349
_c03340
PGA1_c03350: PGA1_c03350 - octaprenyl-diphosphate synthase IspB, at 321,425 to 322,423
_c03350
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 318.692 kb on - strand at 318.694 kb on + strand at 318.702 kb on - strand at 318.714 kb on - strand at 318.714 kb on - strand at 318.757 kb on + strand at 318.757 kb on + strand at 318.757 kb on + strand at 318.765 kb on - strand at 318.765 kb on - strand at 319.985 kb on + strand, within PGA1_c03330 at 319.987 kb on + strand, within PGA1_c03330 at 320.045 kb on + strand, within PGA1_c03330 at 320.055 kb on + strand, within PGA1_c03330 at 320.055 kb on + strand, within PGA1_c03330 at 320.107 kb on + strand, within PGA1_c03330 at 320.120 kb on - strand, within PGA1_c03330 at 320.154 kb on + strand, within PGA1_c03330 at 320.154 kb on + strand, within PGA1_c03330 at 320.282 kb on - strand, within PGA1_c03330 at 320.344 kb on + strand, within PGA1_c03330 at 320.459 kb on - strand at 320.489 kb on + strand at 320.497 kb on - strand at 321.385 kb on + strand at 321.385 kb on + strand at 321.393 kb on - strand at 321.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 318,692 - +0.2 318,694 + +0.6 318,702 - +0.2 318,714 - +0.2 318,714 - +0.6 318,757 + -0.8 318,757 + -0.6 318,757 + -0.3 318,765 - +0.1 318,765 - +0.9 319,985 + PGA1_c03330 0.69 +0.5 319,987 + PGA1_c03330 0.69 -0.3 320,045 + PGA1_c03330 0.73 -1.6 320,055 + PGA1_c03330 0.73 -0.2 320,055 + PGA1_c03330 0.73 -0.8 320,107 + PGA1_c03330 0.76 -2.2 320,120 - PGA1_c03330 0.77 -0.3 320,154 + PGA1_c03330 0.79 +1.2 320,154 + PGA1_c03330 0.79 -1.0 320,282 - PGA1_c03330 0.86 -3.2 320,344 + PGA1_c03330 0.90 -1.7 320,459 - -1.4 320,489 + -0.3 320,497 - -0.4 321,385 + +0.2 321,385 + +0.2 321,393 - -0.6 321,423 + +0.5
Or see this region's nucleotide sequence