Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3092 and HP15_3093 overlap by 32 nucleotides HP15_3093 and HP15_3094 overlap by 4 nucleotides
HP15_3092: HP15_3092 - conserved hypothetical protein, at 3,247,622 to 3,248,755
_3092
HP15_3093: HP15_3093 - phage integrase family protein, at 3,248,724 to 3,249,707
_3093
HP15_3094: HP15_3094 - hypothetical protein, at 3,249,704 to 3,250,969
_3094
Position (kb)
3248
3249
3250 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3247.729 kb on - strand at 3247.732 kb on - strand at 3247.739 kb on - strand, within HP15_3092 at 3247.744 kb on - strand, within HP15_3092 at 3247.764 kb on + strand, within HP15_3092 at 3247.777 kb on + strand, within HP15_3092 at 3247.804 kb on - strand, within HP15_3092 at 3247.841 kb on - strand, within HP15_3092 at 3247.849 kb on - strand, within HP15_3092 at 3248.051 kb on - strand, within HP15_3092 at 3248.070 kb on + strand, within HP15_3092 at 3248.083 kb on - strand, within HP15_3092 at 3248.153 kb on + strand, within HP15_3092 at 3248.347 kb on + strand, within HP15_3092 at 3248.347 kb on - strand, within HP15_3092 at 3248.366 kb on + strand, within HP15_3092 at 3248.420 kb on - strand, within HP15_3092 at 3248.735 kb on + strand at 3248.757 kb on - strand at 3248.902 kb on + strand, within HP15_3093 at 3248.909 kb on + strand, within HP15_3093 at 3249.003 kb on - strand, within HP15_3093 at 3249.005 kb on + strand, within HP15_3093 at 3249.033 kb on - strand, within HP15_3093 at 3249.033 kb on - strand, within HP15_3093 at 3249.094 kb on + strand, within HP15_3093 at 3249.112 kb on - strand, within HP15_3093 at 3249.127 kb on + strand, within HP15_3093 at 3249.160 kb on - strand, within HP15_3093 at 3249.214 kb on + strand, within HP15_3093 at 3249.247 kb on + strand, within HP15_3093 at 3249.314 kb on + strand, within HP15_3093 at 3249.558 kb on - strand, within HP15_3093 at 3249.756 kb on + strand at 3249.756 kb on + strand at 3249.756 kb on + strand at 3249.756 kb on + strand at 3249.764 kb on - strand at 3249.764 kb on - strand at 3249.764 kb on - strand at 3249.764 kb on - strand at 3249.848 kb on - strand, within HP15_3094 at 3249.856 kb on + strand, within HP15_3094 at 3249.907 kb on - strand, within HP15_3094 at 3249.958 kb on - strand, within HP15_3094 at 3250.203 kb on + strand, within HP15_3094 at 3250.318 kb on - strand, within HP15_3094 at 3250.370 kb on + strand, within HP15_3094 at 3250.422 kb on + strand, within HP15_3094 at 3250.449 kb on + strand, within HP15_3094 at 3250.454 kb on + strand, within HP15_3094 at 3250.475 kb on - strand, within HP15_3094 at 3250.485 kb on + strand, within HP15_3094 at 3250.493 kb on + strand, within HP15_3094 at 3250.520 kb on - strand, within HP15_3094 at 3250.520 kb on - strand, within HP15_3094 at 3250.542 kb on - strand, within HP15_3094 at 3250.554 kb on - strand, within HP15_3094 at 3250.655 kb on + strand, within HP15_3094
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,247,729 - +0.2 3,247,732 - -0.2 3,247,739 - HP15_3092 0.10 -0.5 3,247,744 - HP15_3092 0.11 +0.9 3,247,764 + HP15_3092 0.13 +0.7 3,247,777 + HP15_3092 0.14 +0.8 3,247,804 - HP15_3092 0.16 +0.8 3,247,841 - HP15_3092 0.19 +0.1 3,247,849 - HP15_3092 0.20 -1.4 3,248,051 - HP15_3092 0.38 +0.2 3,248,070 + HP15_3092 0.40 +0.1 3,248,083 - HP15_3092 0.41 +0.2 3,248,153 + HP15_3092 0.47 +2.8 3,248,347 + HP15_3092 0.64 +0.5 3,248,347 - HP15_3092 0.64 -0.1 3,248,366 + HP15_3092 0.66 +0.3 3,248,420 - HP15_3092 0.70 -0.2 3,248,735 + -0.0 3,248,757 - -0.4 3,248,902 + HP15_3093 0.18 -0.1 3,248,909 + HP15_3093 0.19 +0.1 3,249,003 - HP15_3093 0.28 +0.2 3,249,005 + HP15_3093 0.29 +0.1 3,249,033 - HP15_3093 0.31 +0.6 3,249,033 - HP15_3093 0.31 +0.8 3,249,094 + HP15_3093 0.38 +1.1 3,249,112 - HP15_3093 0.39 +0.1 3,249,127 + HP15_3093 0.41 +0.4 3,249,160 - HP15_3093 0.44 +0.9 3,249,214 + HP15_3093 0.50 -0.1 3,249,247 + HP15_3093 0.53 +0.5 3,249,314 + HP15_3093 0.60 +0.2 3,249,558 - HP15_3093 0.85 +1.0 3,249,756 + +0.4 3,249,756 + -0.1 3,249,756 + +0.4 3,249,756 + +0.3 3,249,764 - +0.1 3,249,764 - -0.0 3,249,764 - -0.2 3,249,764 - +0.2 3,249,848 - HP15_3094 0.11 +0.0 3,249,856 + HP15_3094 0.12 +0.3 3,249,907 - HP15_3094 0.16 +0.9 3,249,958 - HP15_3094 0.20 +0.2 3,250,203 + HP15_3094 0.39 +0.5 3,250,318 - HP15_3094 0.48 +0.1 3,250,370 + HP15_3094 0.53 -0.3 3,250,422 + HP15_3094 0.57 +0.1 3,250,449 + HP15_3094 0.59 -0.0 3,250,454 + HP15_3094 0.59 +0.7 3,250,475 - HP15_3094 0.61 +0.3 3,250,485 + HP15_3094 0.62 -0.6 3,250,493 + HP15_3094 0.62 +0.4 3,250,520 - HP15_3094 0.64 +0.3 3,250,520 - HP15_3094 0.64 +0.2 3,250,542 - HP15_3094 0.66 -0.2 3,250,554 - HP15_3094 0.67 -0.5 3,250,655 + HP15_3094 0.75 +0.2
Or see this region's nucleotide sequence