Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3043 and HP15_3044 are separated by 162 nucleotides HP15_3044 and HP15_3045 are separated by 331 nucleotides
HP15_3043: HP15_3043 - DNA polymerase III, epsilon subunit, at 3,190,278 to 3,191,738
_3043
HP15_3044: HP15_3044 - conserved hypothetical protein, secreted, at 3,191,901 to 3,193,034
_3044
HP15_3045: HP15_3045 - pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase, at 3,193,366 to 3,195,030
_3045
Position (kb)
3191
3192
3193
3194 Strain fitness (log2 ratio)
-1
0
1 at 3190.914 kb on - strand, within HP15_3043 at 3190.924 kb on - strand, within HP15_3043 at 3190.964 kb on + strand, within HP15_3043 at 3190.972 kb on - strand, within HP15_3043 at 3190.991 kb on + strand, within HP15_3043 at 3190.991 kb on + strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3190.999 kb on - strand, within HP15_3043 at 3191.008 kb on + strand, within HP15_3043 at 3191.010 kb on + strand, within HP15_3043 at 3191.018 kb on - strand, within HP15_3043 at 3191.045 kb on + strand, within HP15_3043 at 3191.116 kb on - strand, within HP15_3043 at 3191.116 kb on - strand, within HP15_3043 at 3191.124 kb on - strand, within HP15_3043 at 3191.134 kb on + strand, within HP15_3043 at 3191.293 kb on + strand, within HP15_3043 at 3191.360 kb on + strand, within HP15_3043 at 3191.466 kb on + strand, within HP15_3043 at 3191.467 kb on + strand, within HP15_3043 at 3191.475 kb on - strand, within HP15_3043 at 3191.475 kb on - strand, within HP15_3043 at 3191.623 kb on + strand at 3191.679 kb on + strand at 3191.988 kb on - strand at 3191.990 kb on + strand at 3191.998 kb on - strand at 3192.024 kb on + strand, within HP15_3044 at 3192.041 kb on - strand, within HP15_3044 at 3192.041 kb on - strand, within HP15_3044 at 3192.327 kb on + strand, within HP15_3044 at 3192.469 kb on + strand, within HP15_3044 at 3192.470 kb on - strand, within HP15_3044 at 3192.477 kb on - strand, within HP15_3044 at 3192.477 kb on - strand, within HP15_3044 at 3192.477 kb on - strand, within HP15_3044 at 3192.478 kb on - strand, within HP15_3044 at 3192.518 kb on + strand, within HP15_3044 at 3192.605 kb on - strand, within HP15_3044 at 3192.661 kb on - strand, within HP15_3044 at 3192.761 kb on - strand, within HP15_3044 at 3192.786 kb on - strand, within HP15_3044 at 3192.932 kb on - strand at 3192.961 kb on - strand at 3193.125 kb on - strand at 3193.140 kb on - strand at 3193.158 kb on + strand at 3193.244 kb on + strand at 3193.252 kb on - strand at 3193.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,190,914 - HP15_3043 0.44 -0.2 3,190,924 - HP15_3043 0.44 -0.3 3,190,964 + HP15_3043 0.47 +0.3 3,190,972 - HP15_3043 0.48 +0.2 3,190,991 + HP15_3043 0.49 -0.6 3,190,991 + HP15_3043 0.49 +1.3 3,190,999 - HP15_3043 0.49 -1.3 3,190,999 - HP15_3043 0.49 +0.8 3,190,999 - HP15_3043 0.49 +0.6 3,190,999 - HP15_3043 0.49 -0.1 3,190,999 - HP15_3043 0.49 -0.3 3,191,008 + HP15_3043 0.50 +0.0 3,191,010 + HP15_3043 0.50 -0.2 3,191,018 - HP15_3043 0.51 -0.1 3,191,045 + HP15_3043 0.52 -0.3 3,191,116 - HP15_3043 0.57 -0.6 3,191,116 - HP15_3043 0.57 -0.3 3,191,124 - HP15_3043 0.58 +0.1 3,191,134 + HP15_3043 0.59 -0.4 3,191,293 + HP15_3043 0.69 +1.2 3,191,360 + HP15_3043 0.74 +0.5 3,191,466 + HP15_3043 0.81 -0.5 3,191,467 + HP15_3043 0.81 +0.1 3,191,475 - HP15_3043 0.82 -0.1 3,191,475 - HP15_3043 0.82 +0.2 3,191,623 + -0.1 3,191,679 + -0.1 3,191,988 - +0.5 3,191,990 + -1.0 3,191,998 - -0.0 3,192,024 + HP15_3044 0.11 -0.4 3,192,041 - HP15_3044 0.12 +0.4 3,192,041 - HP15_3044 0.12 -0.3 3,192,327 + HP15_3044 0.38 +0.5 3,192,469 + HP15_3044 0.50 -1.2 3,192,470 - HP15_3044 0.50 -0.0 3,192,477 - HP15_3044 0.51 -0.5 3,192,477 - HP15_3044 0.51 -0.1 3,192,477 - HP15_3044 0.51 -0.2 3,192,478 - HP15_3044 0.51 +0.7 3,192,518 + HP15_3044 0.54 +0.0 3,192,605 - HP15_3044 0.62 +1.6 3,192,661 - HP15_3044 0.67 -0.0 3,192,761 - HP15_3044 0.76 -1.1 3,192,786 - HP15_3044 0.78 +0.8 3,192,932 - +1.5 3,192,961 - +0.2 3,193,125 - +0.0 3,193,140 - +0.0 3,193,158 + +0.1 3,193,244 + -0.9 3,193,252 - -0.9 3,193,305 - +0.0
Or see this region's nucleotide sequence