Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3040 and HP15_3041 are separated by 61 nucleotides HP15_3041 and HP15_3042 are separated by 9 nucleotides
HP15_3040: HP15_3040 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data) , at 3,186,773 to 3,187,873
_3040
HP15_3041: HP15_3041 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data) , at 3,187,935 to 3,188,954
_3041
HP15_3042: HP15_3042 - acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) (from data) , at 3,188,964 to 3,190,178
_3042
Position (kb)
3187
3188
3189 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3186.987 kb on + strand, within HP15_3040 at 3186.988 kb on - strand, within HP15_3040 at 3187.154 kb on - strand, within HP15_3040 at 3187.160 kb on + strand, within HP15_3040 at 3187.179 kb on + strand, within HP15_3040 at 3187.327 kb on + strand, within HP15_3040 at 3187.328 kb on - strand, within HP15_3040 at 3187.491 kb on + strand, within HP15_3040 at 3187.503 kb on + strand, within HP15_3040 at 3187.506 kb on - strand, within HP15_3040 at 3187.546 kb on + strand, within HP15_3040 at 3187.633 kb on - strand, within HP15_3040 at 3187.682 kb on + strand, within HP15_3040 at 3187.933 kb on + strand at 3188.011 kb on - strand at 3188.060 kb on - strand, within HP15_3041 at 3188.065 kb on - strand, within HP15_3041 at 3188.105 kb on - strand, within HP15_3041 at 3188.126 kb on + strand, within HP15_3041 at 3188.127 kb on - strand, within HP15_3041 at 3188.127 kb on - strand, within HP15_3041 at 3188.290 kb on + strand, within HP15_3041 at 3188.298 kb on - strand, within HP15_3041 at 3188.332 kb on - strand, within HP15_3041 at 3188.357 kb on + strand, within HP15_3041 at 3188.372 kb on - strand, within HP15_3041 at 3188.405 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.475 kb on - strand, within HP15_3041 at 3188.475 kb on - strand, within HP15_3041 at 3188.477 kb on + strand, within HP15_3041 at 3188.548 kb on - strand, within HP15_3041 at 3188.575 kb on + strand, within HP15_3041 at 3188.611 kb on + strand, within HP15_3041 at 3188.619 kb on - strand, within HP15_3041 at 3188.619 kb on - strand, within HP15_3041 at 3188.629 kb on - strand, within HP15_3041 at 3188.647 kb on - strand, within HP15_3041 at 3188.802 kb on - strand, within HP15_3041 at 3188.952 kb on + strand at 3189.059 kb on + strand at 3189.129 kb on - strand, within HP15_3042 at 3189.164 kb on + strand, within HP15_3042 at 3189.198 kb on + strand, within HP15_3042 at 3189.228 kb on - strand, within HP15_3042 at 3189.312 kb on - strand, within HP15_3042 at 3189.350 kb on + strand, within HP15_3042 at 3189.370 kb on - strand, within HP15_3042 at 3189.463 kb on + strand, within HP15_3042 at 3189.463 kb on + strand, within HP15_3042 at 3189.471 kb on - strand, within HP15_3042 at 3189.518 kb on - strand, within HP15_3042 at 3189.583 kb on - strand, within HP15_3042 at 3189.583 kb on - strand, within HP15_3042 at 3189.586 kb on + strand, within HP15_3042 at 3189.596 kb on + strand, within HP15_3042 at 3189.902 kb on - strand, within HP15_3042
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,186,987 + HP15_3040 0.19 +1.1 3,186,988 - HP15_3040 0.20 +0.7 3,187,154 - HP15_3040 0.35 +0.7 3,187,160 + HP15_3040 0.35 +1.0 3,187,179 + HP15_3040 0.37 +0.4 3,187,327 + HP15_3040 0.50 +1.4 3,187,328 - HP15_3040 0.50 +0.3 3,187,491 + HP15_3040 0.65 +0.8 3,187,503 + HP15_3040 0.66 +1.6 3,187,506 - HP15_3040 0.67 +0.9 3,187,546 + HP15_3040 0.70 -0.3 3,187,633 - HP15_3040 0.78 -1.3 3,187,682 + HP15_3040 0.83 +0.4 3,187,933 + +0.7 3,188,011 - +0.3 3,188,060 - HP15_3041 0.12 +0.4 3,188,065 - HP15_3041 0.13 +0.3 3,188,105 - HP15_3041 0.17 +0.7 3,188,126 + HP15_3041 0.19 +1.4 3,188,127 - HP15_3041 0.19 +0.9 3,188,127 - HP15_3041 0.19 +0.6 3,188,290 + HP15_3041 0.35 +1.1 3,188,298 - HP15_3041 0.36 +1.2 3,188,332 - HP15_3041 0.39 +0.4 3,188,357 + HP15_3041 0.41 +1.2 3,188,372 - HP15_3041 0.43 +0.7 3,188,405 + HP15_3041 0.46 +0.6 3,188,467 + HP15_3041 0.52 +1.1 3,188,467 + HP15_3041 0.52 +0.6 3,188,467 + HP15_3041 0.52 +0.2 3,188,467 + HP15_3041 0.52 +0.9 3,188,475 - HP15_3041 0.53 +0.4 3,188,475 - HP15_3041 0.53 +0.7 3,188,477 + HP15_3041 0.53 +1.5 3,188,548 - HP15_3041 0.60 +1.6 3,188,575 + HP15_3041 0.63 +1.9 3,188,611 + HP15_3041 0.66 +1.0 3,188,619 - HP15_3041 0.67 +1.4 3,188,619 - HP15_3041 0.67 +1.0 3,188,629 - HP15_3041 0.68 +0.5 3,188,647 - HP15_3041 0.70 +0.9 3,188,802 - HP15_3041 0.85 +0.2 3,188,952 + +0.4 3,189,059 + -0.1 3,189,129 - HP15_3042 0.14 -2.3 3,189,164 + HP15_3042 0.16 -0.6 3,189,198 + HP15_3042 0.19 -0.1 3,189,228 - HP15_3042 0.22 -3.9 3,189,312 - HP15_3042 0.29 -0.1 3,189,350 + HP15_3042 0.32 +0.5 3,189,370 - HP15_3042 0.33 -1.7 3,189,463 + HP15_3042 0.41 -0.4 3,189,463 + HP15_3042 0.41 +0.1 3,189,471 - HP15_3042 0.42 -1.0 3,189,518 - HP15_3042 0.46 -2.8 3,189,583 - HP15_3042 0.51 -2.2 3,189,583 - HP15_3042 0.51 -0.8 3,189,586 + HP15_3042 0.51 -0.2 3,189,596 + HP15_3042 0.52 -0.5 3,189,902 - HP15_3042 0.77 -1.7
Or see this region's nucleotide sequence