Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3039 and HP15_3040 overlap by 13 nucleotides HP15_3040 and HP15_3041 are separated by 61 nucleotides
HP15_3039: HP15_3039 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 3,185,310 to 3,186,785
_3039
HP15_3040: HP15_3040 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data) , at 3,186,773 to 3,187,873
_3040
HP15_3041: HP15_3041 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data) , at 3,187,935 to 3,188,954
_3041
Position (kb)
3186
3187
3188 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3185.943 kb on + strand, within HP15_3039 at 3186.099 kb on - strand, within HP15_3039 at 3186.101 kb on + strand, within HP15_3039 at 3186.161 kb on - strand, within HP15_3039 at 3186.278 kb on - strand, within HP15_3039 at 3186.283 kb on - strand, within HP15_3039 at 3186.305 kb on + strand, within HP15_3039 at 3186.451 kb on + strand, within HP15_3039 at 3186.558 kb on - strand, within HP15_3039 at 3186.737 kb on - strand at 3186.795 kb on + strand at 3186.803 kb on - strand at 3186.805 kb on - strand at 3186.899 kb on - strand, within HP15_3040 at 3186.913 kb on + strand, within HP15_3040 at 3186.987 kb on + strand, within HP15_3040 at 3186.988 kb on - strand, within HP15_3040 at 3187.154 kb on - strand, within HP15_3040 at 3187.160 kb on + strand, within HP15_3040 at 3187.179 kb on + strand, within HP15_3040 at 3187.327 kb on + strand, within HP15_3040 at 3187.328 kb on - strand, within HP15_3040 at 3187.491 kb on + strand, within HP15_3040 at 3187.503 kb on + strand, within HP15_3040 at 3187.506 kb on - strand, within HP15_3040 at 3187.546 kb on + strand, within HP15_3040 at 3187.633 kb on - strand, within HP15_3040 at 3187.682 kb on + strand, within HP15_3040 at 3187.933 kb on + strand at 3188.011 kb on - strand at 3188.060 kb on - strand, within HP15_3041 at 3188.065 kb on - strand, within HP15_3041 at 3188.105 kb on - strand, within HP15_3041 at 3188.126 kb on + strand, within HP15_3041 at 3188.127 kb on - strand, within HP15_3041 at 3188.127 kb on - strand, within HP15_3041 at 3188.290 kb on + strand, within HP15_3041 at 3188.298 kb on - strand, within HP15_3041 at 3188.332 kb on - strand, within HP15_3041 at 3188.357 kb on + strand, within HP15_3041 at 3188.372 kb on - strand, within HP15_3041 at 3188.405 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.467 kb on + strand, within HP15_3041 at 3188.475 kb on - strand, within HP15_3041 at 3188.475 kb on - strand, within HP15_3041 at 3188.477 kb on + strand, within HP15_3041 at 3188.548 kb on - strand, within HP15_3041 at 3188.575 kb on + strand, within HP15_3041 at 3188.611 kb on + strand, within HP15_3041 at 3188.619 kb on - strand, within HP15_3041 at 3188.619 kb on - strand, within HP15_3041 at 3188.629 kb on - strand, within HP15_3041 at 3188.647 kb on - strand, within HP15_3041 at 3188.802 kb on - strand, within HP15_3041
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,185,943 + HP15_3039 0.43 -1.4 3,186,099 - HP15_3039 0.53 -2.3 3,186,101 + HP15_3039 0.54 -0.8 3,186,161 - HP15_3039 0.58 -1.8 3,186,278 - HP15_3039 0.66 -1.5 3,186,283 - HP15_3039 0.66 -0.6 3,186,305 + HP15_3039 0.67 -1.6 3,186,451 + HP15_3039 0.77 -2.0 3,186,558 - HP15_3039 0.85 -1.6 3,186,737 - -1.8 3,186,795 + -0.0 3,186,803 - +2.0 3,186,805 - +0.9 3,186,899 - HP15_3040 0.11 +0.5 3,186,913 + HP15_3040 0.13 +1.1 3,186,987 + HP15_3040 0.19 +1.1 3,186,988 - HP15_3040 0.20 +0.7 3,187,154 - HP15_3040 0.35 +0.7 3,187,160 + HP15_3040 0.35 +1.0 3,187,179 + HP15_3040 0.37 +0.4 3,187,327 + HP15_3040 0.50 +1.4 3,187,328 - HP15_3040 0.50 +0.3 3,187,491 + HP15_3040 0.65 +0.8 3,187,503 + HP15_3040 0.66 +1.6 3,187,506 - HP15_3040 0.67 +0.9 3,187,546 + HP15_3040 0.70 -0.3 3,187,633 - HP15_3040 0.78 -1.3 3,187,682 + HP15_3040 0.83 +0.4 3,187,933 + +0.7 3,188,011 - +0.3 3,188,060 - HP15_3041 0.12 +0.4 3,188,065 - HP15_3041 0.13 +0.3 3,188,105 - HP15_3041 0.17 +0.7 3,188,126 + HP15_3041 0.19 +1.4 3,188,127 - HP15_3041 0.19 +0.9 3,188,127 - HP15_3041 0.19 +0.6 3,188,290 + HP15_3041 0.35 +1.1 3,188,298 - HP15_3041 0.36 +1.2 3,188,332 - HP15_3041 0.39 +0.4 3,188,357 + HP15_3041 0.41 +1.2 3,188,372 - HP15_3041 0.43 +0.7 3,188,405 + HP15_3041 0.46 +0.6 3,188,467 + HP15_3041 0.52 +1.1 3,188,467 + HP15_3041 0.52 +0.6 3,188,467 + HP15_3041 0.52 +0.2 3,188,467 + HP15_3041 0.52 +0.9 3,188,475 - HP15_3041 0.53 +0.4 3,188,475 - HP15_3041 0.53 +0.7 3,188,477 + HP15_3041 0.53 +1.5 3,188,548 - HP15_3041 0.60 +1.6 3,188,575 + HP15_3041 0.63 +1.9 3,188,611 + HP15_3041 0.66 +1.0 3,188,619 - HP15_3041 0.67 +1.4 3,188,619 - HP15_3041 0.67 +1.0 3,188,629 - HP15_3041 0.68 +0.5 3,188,647 - HP15_3041 0.70 +0.9 3,188,802 - HP15_3041 0.85 +0.2
Or see this region's nucleotide sequence