Strain Fitness in Marinobacter adhaerens HP15 around HP15_2436

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2434 and HP15_2435 are separated by 34 nucleotidesHP15_2435 and HP15_2436 overlap by 4 nucleotidesHP15_2436 and HP15_2437 are separated by 188 nucleotides HP15_2434: HP15_2434 - mammalian cell entry related domain protein, at 2,574,104 to 2,574,553 _2434 HP15_2435: HP15_2435 - ABC-type transport system involved in resistance to organic solvents, permease component, at 2,574,588 to 2,575,370 _2435 HP15_2436: HP15_2436 - toluene tolerance ABC efflux transporter, ATP-binding protein, at 2,575,367 to 2,576,179 _2436 HP15_2437: HP15_2437 - KpsF/GutQ family protein, at 2,576,368 to 2,577,347 _2437 Position (kb) 2575 2576 2577Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2574.369 kb on - strand, within HP15_2434at 2574.369 kb on - strand, within HP15_2434at 2574.560 kb on - strandat 2574.617 kb on + strandat 2574.705 kb on + strand, within HP15_2435at 2574.713 kb on - strand, within HP15_2435at 2574.732 kb on + strand, within HP15_2435at 2574.771 kb on + strand, within HP15_2435at 2574.803 kb on + strand, within HP15_2435at 2574.836 kb on + strand, within HP15_2435at 2574.853 kb on + strand, within HP15_2435at 2575.104 kb on + strand, within HP15_2435at 2575.137 kb on + strand, within HP15_2435at 2575.142 kb on + strand, within HP15_2435at 2575.155 kb on - strand, within HP15_2435at 2575.161 kb on + strand, within HP15_2435at 2575.225 kb on + strand, within HP15_2435at 2575.233 kb on - strand, within HP15_2435at 2575.233 kb on - strand, within HP15_2435at 2575.360 kb on - strandat 2575.377 kb on + strandat 2575.495 kb on + strand, within HP15_2436at 2575.500 kb on + strand, within HP15_2436at 2575.503 kb on - strand, within HP15_2436at 2575.603 kb on - strand, within HP15_2436at 2575.613 kb on + strand, within HP15_2436at 2575.629 kb on + strand, within HP15_2436at 2575.718 kb on + strand, within HP15_2436at 2575.721 kb on - strand, within HP15_2436at 2575.786 kb on + strand, within HP15_2436at 2575.910 kb on + strand, within HP15_2436at 2575.943 kb on + strand, within HP15_2436at 2575.951 kb on - strand, within HP15_2436at 2575.987 kb on + strand, within HP15_2436at 2576.007 kb on + strand, within HP15_2436at 2576.073 kb on - strand, within HP15_2436at 2576.073 kb on - strand, within HP15_2436at 2576.210 kb on + strandat 2576.260 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
remove
2,574,369 - HP15_2434 0.59 -3.4
2,574,369 - HP15_2434 0.59 -2.8
2,574,560 - -2.7
2,574,617 + -5.3
2,574,705 + HP15_2435 0.15 -5.9
2,574,713 - HP15_2435 0.16 -2.5
2,574,732 + HP15_2435 0.18 -4.7
2,574,771 + HP15_2435 0.23 -3.0
2,574,803 + HP15_2435 0.27 -4.1
2,574,836 + HP15_2435 0.32 -3.7
2,574,853 + HP15_2435 0.34 -2.5
2,575,104 + HP15_2435 0.66 -4.4
2,575,137 + HP15_2435 0.70 -4.0
2,575,142 + HP15_2435 0.71 -4.9
2,575,155 - HP15_2435 0.72 -1.5
2,575,161 + HP15_2435 0.73 -6.3
2,575,225 + HP15_2435 0.81 -4.3
2,575,233 - HP15_2435 0.82 -2.8
2,575,233 - HP15_2435 0.82 -2.6
2,575,360 - -2.1
2,575,377 + -3.3
2,575,495 + HP15_2436 0.16 -4.5
2,575,500 + HP15_2436 0.16 -3.6
2,575,503 - HP15_2436 0.17 -2.7
2,575,603 - HP15_2436 0.29 -2.1
2,575,613 + HP15_2436 0.30 -4.2
2,575,629 + HP15_2436 0.32 -4.6
2,575,718 + HP15_2436 0.43 -0.7
2,575,721 - HP15_2436 0.44 -4.0
2,575,786 + HP15_2436 0.52 -2.3
2,575,910 + HP15_2436 0.67 -4.5
2,575,943 + HP15_2436 0.71 -3.4
2,575,951 - HP15_2436 0.72 -3.4
2,575,987 + HP15_2436 0.76 -4.7
2,576,007 + HP15_2436 0.79 -4.0
2,576,073 - HP15_2436 0.87 -1.6
2,576,073 - HP15_2436 0.87 -4.0
2,576,210 + -1.5
2,576,260 + -0.4

Or see this region's nucleotide sequence